miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29021 5' -59.7 NC_006146.1 + 57294 1.08 0.001775
Target:  5'- gACGGUCCCCCAGGAGGCCUUUGUGGAc -3'
miRNA:   3'- -UGCCAGGGGGUCCUCCGGAAACACCU- -5'
29021 5' -59.7 NC_006146.1 + 168472 0.75 0.278744
Target:  5'- cCGG-CCCCUcuccuGGGAGGCCacgUGUGGAg -3'
miRNA:   3'- uGCCaGGGGG-----UCCUCCGGaa-ACACCU- -5'
29021 5' -59.7 NC_006146.1 + 167540 0.75 0.278744
Target:  5'- cCGG-CCCCUcuccuGGGAGGCCacgUGUGGAg -3'
miRNA:   3'- uGCCaGGGGG-----UCCUCCGGaa-ACACCU- -5'
29021 5' -59.7 NC_006146.1 + 170335 0.75 0.278744
Target:  5'- cCGG-CCCCUcuccuGGGAGGCCacgUGUGGAg -3'
miRNA:   3'- uGCCaGGGGG-----UCCUCCGGaa-ACACCU- -5'
29021 5' -59.7 NC_006146.1 + 169404 0.75 0.278744
Target:  5'- cCGG-CCCCUcuccuGGGAGGCCacgUGUGGAg -3'
miRNA:   3'- uGCCaGGGGG-----UCCUCCGGaa-ACACCU- -5'
29021 5' -59.7 NC_006146.1 + 8900 0.74 0.348272
Target:  5'- cCGGUCUCCCAGGGuGCCUauccaccGUGGAg -3'
miRNA:   3'- uGCCAGGGGGUCCUcCGGAaa-----CACCU- -5'
29021 5' -59.7 NC_006146.1 + 9034 0.71 0.482974
Target:  5'- -gGGUCUCCCAGGGaGCCUauccaccGUGGAg -3'
miRNA:   3'- ugCCAGGGGGUCCUcCGGAaa-----CACCU- -5'
29021 5' -59.7 NC_006146.1 + 9101 0.71 0.482974
Target:  5'- -gGGUCUCCCAGGGaGCCUauccaccGUGGAg -3'
miRNA:   3'- ugCCAGGGGGUCCUcCGGAaa-----CACCU- -5'
29021 5' -59.7 NC_006146.1 + 169434 0.71 0.492231
Target:  5'- -aGG-CCCgCGGaGAGGCCgugUGUGGAg -3'
miRNA:   3'- ugCCaGGGgGUC-CUCCGGaa-ACACCU- -5'
29021 5' -59.7 NC_006146.1 + 168502 0.71 0.492231
Target:  5'- -aGG-CCCgCGGaGAGGCCgugUGUGGAg -3'
miRNA:   3'- ugCCaGGGgGUC-CUCCGGaa-ACACCU- -5'
29021 5' -59.7 NC_006146.1 + 167570 0.71 0.492231
Target:  5'- -aGG-CCCgCGGaGAGGCCgugUGUGGAg -3'
miRNA:   3'- ugCCaGGGgGUC-CUCCGGaa-ACACCU- -5'
29021 5' -59.7 NC_006146.1 + 170365 0.71 0.492231
Target:  5'- -aGG-CCCgCGGaGAGGCCgugUGUGGAg -3'
miRNA:   3'- ugCCaGGGgGUC-CUCCGGaa-ACACCU- -5'
29021 5' -59.7 NC_006146.1 + 123515 0.7 0.520472
Target:  5'- cACGGUCgaCCCCAGGcGGGUCgcggGUGGc -3'
miRNA:   3'- -UGCCAG--GGGGUCC-UCCGGaaa-CACCu -5'
29021 5' -59.7 NC_006146.1 + 55149 0.7 0.538682
Target:  5'- -gGGaCCCCCaaugucagccgccGGGAGGCCaggGUGGAc -3'
miRNA:   3'- ugCCaGGGGG-------------UCCUCCGGaaaCACCU- -5'
29021 5' -59.7 NC_006146.1 + 57126 0.7 0.539646
Target:  5'- uAUGGUCCCUaauuuCGGGGGGCUg--GUGGc -3'
miRNA:   3'- -UGCCAGGGG-----GUCCUCCGGaaaCACCu -5'
29021 5' -59.7 NC_006146.1 + 76097 0.7 0.549324
Target:  5'- gUGGgcaaCCCCCGGGccucGGCCUacGUGGAc -3'
miRNA:   3'- uGCCa---GGGGGUCCu---CCGGAaaCACCU- -5'
29021 5' -59.7 NC_006146.1 + 137021 0.7 0.559055
Target:  5'- cCGGgcacaCCCCggggAGGAGGCCgg-GUGGGg -3'
miRNA:   3'- uGCCag---GGGG----UCCUCCGGaaaCACCU- -5'
29021 5' -59.7 NC_006146.1 + 18116 0.7 0.568833
Target:  5'- cCGGgCCCCCAGGucucGGGCCagagguaaGUGGAc -3'
miRNA:   3'- uGCCaGGGGGUCC----UCCGGaaa-----CACCU- -5'
29021 5' -59.7 NC_006146.1 + 21194 0.7 0.568833
Target:  5'- cCGGgCCCCCAGGucucGGGCCagagguaaGUGGAc -3'
miRNA:   3'- uGCCaGGGGGUCC----UCCGGaaa-----CACCU- -5'
29021 5' -59.7 NC_006146.1 + 15038 0.7 0.568833
Target:  5'- cCGGgCCCCCAGGucucGGGCCagagguaaGUGGAc -3'
miRNA:   3'- uGCCaGGGGGUCC----UCCGGaaa-----CACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.