miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29021 5' -59.7 NC_006146.1 + 8900 0.74 0.348272
Target:  5'- cCGGUCUCCCAGGGuGCCUauccaccGUGGAg -3'
miRNA:   3'- uGCCAGGGGGUCCUcCGGAaa-----CACCU- -5'
29021 5' -59.7 NC_006146.1 + 8968 0.66 0.782237
Target:  5'- -gGGUCUCCCAGGGuGCUauccaccGUGGAg -3'
miRNA:   3'- ugCCAGGGGGUCCUcCGGaaa----CACCU- -5'
29021 5' -59.7 NC_006146.1 + 9034 0.71 0.482974
Target:  5'- -gGGUCUCCCAGGGaGCCUauccaccGUGGAg -3'
miRNA:   3'- ugCCAGGGGGUCCUcCGGAaa-----CACCU- -5'
29021 5' -59.7 NC_006146.1 + 9101 0.71 0.482974
Target:  5'- -gGGUCUCCCAGGGaGCCUauccaccGUGGAg -3'
miRNA:   3'- ugCCAGGGGGUCCUcCGGAaa-----CACCU- -5'
29021 5' -59.7 NC_006146.1 + 11555 0.67 0.697386
Target:  5'- aGCGGUCCCUaaGGGGGGCUgcuaaGGAc -3'
miRNA:   3'- -UGCCAGGGGg-UCCUCCGGaaacaCCU- -5'
29021 5' -59.7 NC_006146.1 + 12723 0.66 0.754796
Target:  5'- -gGGUCCUgacggCCaAGGAGGCCaagGUGGu -3'
miRNA:   3'- ugCCAGGG-----GG-UCCUCCGGaaaCACCu -5'
29021 5' -59.7 NC_006146.1 + 15038 0.7 0.568833
Target:  5'- cCGGgCCCCCAGGucucGGGCCagagguaaGUGGAc -3'
miRNA:   3'- uGCCaGGGGGUCC----UCCGGaaa-----CACCU- -5'
29021 5' -59.7 NC_006146.1 + 18116 0.7 0.568833
Target:  5'- cCGGgCCCCCAGGucucGGGCCagagguaaGUGGAc -3'
miRNA:   3'- uGCCaGGGGGUCC----UCCGGaaa-----CACCU- -5'
29021 5' -59.7 NC_006146.1 + 21194 0.7 0.568833
Target:  5'- cCGGgCCCCCAGGucucGGGCCagagguaaGUGGAc -3'
miRNA:   3'- uGCCaGGGGGUCC----UCCGGaaa-----CACCU- -5'
29021 5' -59.7 NC_006146.1 + 24272 0.7 0.568833
Target:  5'- cCGGgCCCCCAGGucucGGGCCagagguaaGUGGAc -3'
miRNA:   3'- uGCCaGGGGGUCC----UCCGGaaa-----CACCU- -5'
29021 5' -59.7 NC_006146.1 + 27350 0.7 0.568833
Target:  5'- cCGGgCCCCCAGGucucGGGCCagagguaaGUGGAc -3'
miRNA:   3'- uGCCaGGGGGUCC----UCCGGaaa-----CACCU- -5'
29021 5' -59.7 NC_006146.1 + 32932 0.69 0.578654
Target:  5'- cCGG-CCCCCGGGAGGCCc------- -3'
miRNA:   3'- uGCCaGGGGGUCCUCCGGaaacaccu -5'
29021 5' -59.7 NC_006146.1 + 33195 0.68 0.638109
Target:  5'- cCGGgcaCCCCCgggGGGAGGCCggagggGGAg -3'
miRNA:   3'- uGCCa--GGGGG---UCCUCCGGaaaca-CCU- -5'
29021 5' -59.7 NC_006146.1 + 41055 0.69 0.578654
Target:  5'- gGCGG-CCCU--GGGGGCCUcgggGUGGAg -3'
miRNA:   3'- -UGCCaGGGGguCCUCCGGAaa--CACCU- -5'
29021 5' -59.7 NC_006146.1 + 50811 0.66 0.782237
Target:  5'- uACGGUCCCagGGGGGGauCCUUg--GGGg -3'
miRNA:   3'- -UGCCAGGGggUCCUCC--GGAAacaCCU- -5'
29021 5' -59.7 NC_006146.1 + 51648 0.66 0.791141
Target:  5'- cUGGaCUCCCAGGGGGCCagggccggUGccgGGAc -3'
miRNA:   3'- uGCCaGGGGGUCCUCCGGaa------ACa--CCU- -5'
29021 5' -59.7 NC_006146.1 + 51739 0.66 0.773206
Target:  5'- gGCGGcgCCCCgAGGuGGGCUUcUUGUGcGGg -3'
miRNA:   3'- -UGCCa-GGGGgUCC-UCCGGA-AACAC-CU- -5'
29021 5' -59.7 NC_006146.1 + 53408 0.68 0.664903
Target:  5'- cUGG-CCUCCAGGAGGCCaaaucauaugaaucUgcugguggUUGUGGAu -3'
miRNA:   3'- uGCCaGGGGGUCCUCCGG--------------A--------AACACCU- -5'
29021 5' -59.7 NC_006146.1 + 55149 0.7 0.538682
Target:  5'- -gGGaCCCCCaaugucagccgccGGGAGGCCaggGUGGAc -3'
miRNA:   3'- ugCCaGGGGG-------------UCCUCCGGaaaCACCU- -5'
29021 5' -59.7 NC_006146.1 + 57126 0.7 0.539646
Target:  5'- uAUGGUCCCUaauuuCGGGGGGCUg--GUGGc -3'
miRNA:   3'- -UGCCAGGGG-----GUCCUCCGGaaaCACCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.