Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29021 | 5' | -59.7 | NC_006146.1 | + | 57294 | 1.08 | 0.001775 |
Target: 5'- gACGGUCCCCCAGGAGGCCUUUGUGGAc -3' miRNA: 3'- -UGCCAGGGGGUCCUCCGGAAACACCU- -5' |
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29021 | 5' | -59.7 | NC_006146.1 | + | 137970 | 0.67 | 0.716818 |
Target: 5'- cGCGGccgggCCUCCcGGGGGCCcggcgggGUGGGg -3' miRNA: 3'- -UGCCa----GGGGGuCCUCCGGaaa----CACCU- -5' |
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29021 | 5' | -59.7 | NC_006146.1 | + | 168530 | 0.67 | 0.745433 |
Target: 5'- cCGGgccUCCCCuGGGGGCCUcgGgggcGGAg -3' miRNA: 3'- uGCCa--GGGGGuCCUCCGGAaaCa---CCU- -5' |
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29021 | 5' | -59.7 | NC_006146.1 | + | 148504 | 0.66 | 0.773206 |
Target: 5'- cACGGUggaCCCC-GG-GGCCaggGUGGAg -3' miRNA: 3'- -UGCCAg--GGGGuCCuCCGGaaaCACCU- -5' |
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29021 | 5' | -59.7 | NC_006146.1 | + | 170335 | 0.75 | 0.278744 |
Target: 5'- cCGG-CCCCUcuccuGGGAGGCCacgUGUGGAg -3' miRNA: 3'- uGCCaGGGGG-----UCCUCCGGaa-ACACCU- -5' |
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29021 | 5' | -59.7 | NC_006146.1 | + | 167570 | 0.71 | 0.492231 |
Target: 5'- -aGG-CCCgCGGaGAGGCCgugUGUGGAg -3' miRNA: 3'- ugCCaGGGgGUC-CUCCGGaa-ACACCU- -5' |
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29021 | 5' | -59.7 | NC_006146.1 | + | 169434 | 0.71 | 0.492231 |
Target: 5'- -aGG-CCCgCGGaGAGGCCgugUGUGGAg -3' miRNA: 3'- ugCCaGGGgGUC-CUCCGGaa-ACACCU- -5' |
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29021 | 5' | -59.7 | NC_006146.1 | + | 170365 | 0.71 | 0.492231 |
Target: 5'- -aGG-CCCgCGGaGAGGCCgugUGUGGAg -3' miRNA: 3'- ugCCaGGGgGUC-CUCCGGaa-ACACCU- -5' |
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29021 | 5' | -59.7 | NC_006146.1 | + | 18116 | 0.7 | 0.568833 |
Target: 5'- cCGGgCCCCCAGGucucGGGCCagagguaaGUGGAc -3' miRNA: 3'- uGCCaGGGGGUCC----UCCGGaaa-----CACCU- -5' |
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29021 | 5' | -59.7 | NC_006146.1 | + | 11555 | 0.67 | 0.697386 |
Target: 5'- aGCGGUCCCUaaGGGGGGCUgcuaaGGAc -3' miRNA: 3'- -UGCCAGGGGg-UCCUCCGGaaacaCCU- -5' |
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29021 | 5' | -59.7 | NC_006146.1 | + | 24272 | 0.7 | 0.568833 |
Target: 5'- cCGGgCCCCCAGGucucGGGCCagagguaaGUGGAc -3' miRNA: 3'- uGCCaGGGGGUCC----UCCGGaaa-----CACCU- -5' |
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29021 | 5' | -59.7 | NC_006146.1 | + | 15038 | 0.7 | 0.568833 |
Target: 5'- cCGGgCCCCCAGGucucGGGCCagagguaaGUGGAc -3' miRNA: 3'- uGCCaGGGGGUCC----UCCGGaaa-----CACCU- -5' |
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29021 | 5' | -59.7 | NC_006146.1 | + | 167540 | 0.75 | 0.278744 |
Target: 5'- cCGG-CCCCUcuccuGGGAGGCCacgUGUGGAg -3' miRNA: 3'- uGCCaGGGGG-----UCCUCCGGaa-ACACCU- -5' |
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29021 | 5' | -59.7 | NC_006146.1 | + | 27350 | 0.7 | 0.568833 |
Target: 5'- cCGGgCCCCCAGGucucGGGCCagagguaaGUGGAc -3' miRNA: 3'- uGCCaGGGGGUCC----UCCGGaaa-----CACCU- -5' |
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29021 | 5' | -59.7 | NC_006146.1 | + | 168472 | 0.75 | 0.278744 |
Target: 5'- cCGG-CCCCUcuccuGGGAGGCCacgUGUGGAg -3' miRNA: 3'- uGCCaGGGGG-----UCCUCCGGaa-ACACCU- -5' |
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29021 | 5' | -59.7 | NC_006146.1 | + | 57126 | 0.7 | 0.539646 |
Target: 5'- uAUGGUCCCUaauuuCGGGGGGCUg--GUGGc -3' miRNA: 3'- -UGCCAGGGG-----GUCCUCCGGaaaCACCu -5' |
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29021 | 5' | -59.7 | NC_006146.1 | + | 139146 | 0.68 | 0.687588 |
Target: 5'- aACGGgggcucccgUCCCCCGGGGGGgCgccUGUGaGGc -3' miRNA: 3'- -UGCC---------AGGGGGUCCUCCgGaa-ACAC-CU- -5' |
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29021 | 5' | -59.7 | NC_006146.1 | + | 167598 | 0.67 | 0.745433 |
Target: 5'- cCGGgccUCCCCuGGGGGCCUcgGgggcGGAg -3' miRNA: 3'- uGCCa--GGGGGuCCUCCGGAaaCa---CCU- -5' |
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29021 | 5' | -59.7 | NC_006146.1 | + | 169404 | 0.75 | 0.278744 |
Target: 5'- cCGG-CCCCUcuccuGGGAGGCCacgUGUGGAg -3' miRNA: 3'- uGCCaGGGGG-----UCCUCCGGaa-ACACCU- -5' |
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29021 | 5' | -59.7 | NC_006146.1 | + | 168502 | 0.71 | 0.492231 |
Target: 5'- -aGG-CCCgCGGaGAGGCCgugUGUGGAg -3' miRNA: 3'- ugCCaGGGgGUC-CUCCGGaa-ACACCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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