miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29021 5' -59.7 NC_006146.1 + 57294 1.08 0.001775
Target:  5'- gACGGUCCCCCAGGAGGCCUUUGUGGAc -3'
miRNA:   3'- -UGCCAGGGGGUCCUCCGGAAACACCU- -5'
29021 5' -59.7 NC_006146.1 + 137970 0.67 0.716818
Target:  5'- cGCGGccgggCCUCCcGGGGGCCcggcgggGUGGGg -3'
miRNA:   3'- -UGCCa----GGGGGuCCUCCGGaaa----CACCU- -5'
29021 5' -59.7 NC_006146.1 + 168530 0.67 0.745433
Target:  5'- cCGGgccUCCCCuGGGGGCCUcgGgggcGGAg -3'
miRNA:   3'- uGCCa--GGGGGuCCUCCGGAaaCa---CCU- -5'
29021 5' -59.7 NC_006146.1 + 148504 0.66 0.773206
Target:  5'- cACGGUggaCCCC-GG-GGCCaggGUGGAg -3'
miRNA:   3'- -UGCCAg--GGGGuCCuCCGGaaaCACCU- -5'
29021 5' -59.7 NC_006146.1 + 170335 0.75 0.278744
Target:  5'- cCGG-CCCCUcuccuGGGAGGCCacgUGUGGAg -3'
miRNA:   3'- uGCCaGGGGG-----UCCUCCGGaa-ACACCU- -5'
29021 5' -59.7 NC_006146.1 + 167570 0.71 0.492231
Target:  5'- -aGG-CCCgCGGaGAGGCCgugUGUGGAg -3'
miRNA:   3'- ugCCaGGGgGUC-CUCCGGaa-ACACCU- -5'
29021 5' -59.7 NC_006146.1 + 169434 0.71 0.492231
Target:  5'- -aGG-CCCgCGGaGAGGCCgugUGUGGAg -3'
miRNA:   3'- ugCCaGGGgGUC-CUCCGGaa-ACACCU- -5'
29021 5' -59.7 NC_006146.1 + 170365 0.71 0.492231
Target:  5'- -aGG-CCCgCGGaGAGGCCgugUGUGGAg -3'
miRNA:   3'- ugCCaGGGgGUC-CUCCGGaa-ACACCU- -5'
29021 5' -59.7 NC_006146.1 + 18116 0.7 0.568833
Target:  5'- cCGGgCCCCCAGGucucGGGCCagagguaaGUGGAc -3'
miRNA:   3'- uGCCaGGGGGUCC----UCCGGaaa-----CACCU- -5'
29021 5' -59.7 NC_006146.1 + 11555 0.67 0.697386
Target:  5'- aGCGGUCCCUaaGGGGGGCUgcuaaGGAc -3'
miRNA:   3'- -UGCCAGGGGg-UCCUCCGGaaacaCCU- -5'
29021 5' -59.7 NC_006146.1 + 24272 0.7 0.568833
Target:  5'- cCGGgCCCCCAGGucucGGGCCagagguaaGUGGAc -3'
miRNA:   3'- uGCCaGGGGGUCC----UCCGGaaa-----CACCU- -5'
29021 5' -59.7 NC_006146.1 + 15038 0.7 0.568833
Target:  5'- cCGGgCCCCCAGGucucGGGCCagagguaaGUGGAc -3'
miRNA:   3'- uGCCaGGGGGUCC----UCCGGaaa-----CACCU- -5'
29021 5' -59.7 NC_006146.1 + 167540 0.75 0.278744
Target:  5'- cCGG-CCCCUcuccuGGGAGGCCacgUGUGGAg -3'
miRNA:   3'- uGCCaGGGGG-----UCCUCCGGaa-ACACCU- -5'
29021 5' -59.7 NC_006146.1 + 27350 0.7 0.568833
Target:  5'- cCGGgCCCCCAGGucucGGGCCagagguaaGUGGAc -3'
miRNA:   3'- uGCCaGGGGGUCC----UCCGGaaa-----CACCU- -5'
29021 5' -59.7 NC_006146.1 + 168472 0.75 0.278744
Target:  5'- cCGG-CCCCUcuccuGGGAGGCCacgUGUGGAg -3'
miRNA:   3'- uGCCaGGGGG-----UCCUCCGGaa-ACACCU- -5'
29021 5' -59.7 NC_006146.1 + 57126 0.7 0.539646
Target:  5'- uAUGGUCCCUaauuuCGGGGGGCUg--GUGGc -3'
miRNA:   3'- -UGCCAGGGG-----GUCCUCCGGaaaCACCu -5'
29021 5' -59.7 NC_006146.1 + 139146 0.68 0.687588
Target:  5'- aACGGgggcucccgUCCCCCGGGGGGgCgccUGUGaGGc -3'
miRNA:   3'- -UGCC---------AGGGGGUCCUCCgGaa-ACAC-CU- -5'
29021 5' -59.7 NC_006146.1 + 167598 0.67 0.745433
Target:  5'- cCGGgccUCCCCuGGGGGCCUcgGgggcGGAg -3'
miRNA:   3'- uGCCa--GGGGGuCCUCCGGAaaCa---CCU- -5'
29021 5' -59.7 NC_006146.1 + 169404 0.75 0.278744
Target:  5'- cCGG-CCCCUcuccuGGGAGGCCacgUGUGGAg -3'
miRNA:   3'- uGCCaGGGGG-----UCCUCCGGaa-ACACCU- -5'
29021 5' -59.7 NC_006146.1 + 168502 0.71 0.492231
Target:  5'- -aGG-CCCgCGGaGAGGCCgugUGUGGAg -3'
miRNA:   3'- ugCCaGGGgGUC-CUCCGGaa-ACACCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.