Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29021 | 5' | -59.7 | NC_006146.1 | + | 167598 | 0.67 | 0.745433 |
Target: 5'- cCGGgccUCCCCuGGGGGCCUcgGgggcGGAg -3' miRNA: 3'- uGCCa--GGGGGuCCUCCGGAaaCa---CCU- -5' |
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29021 | 5' | -59.7 | NC_006146.1 | + | 168530 | 0.67 | 0.745433 |
Target: 5'- cCGGgccUCCCCuGGGGGCCUcgGgggcGGAg -3' miRNA: 3'- uGCCa--GGGGGuCCUCCGGAaaCa---CCU- -5' |
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29021 | 5' | -59.7 | NC_006146.1 | + | 170393 | 0.67 | 0.745433 |
Target: 5'- cCGGgccUCCCCuGGGGGCCUcgGgggcGGAg -3' miRNA: 3'- uGCCa--GGGGGuCCUCCGGAaaCa---CCU- -5' |
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29021 | 5' | -59.7 | NC_006146.1 | + | 166992 | 0.67 | 0.745433 |
Target: 5'- cACGGUaCCCgagaCCuuGGGGGCCUcgucgGUGGGc -3' miRNA: 3'- -UGCCA-GGG----GGu-CCUCCGGAaa---CACCU- -5' |
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29021 | 5' | -59.7 | NC_006146.1 | + | 169462 | 0.67 | 0.745433 |
Target: 5'- cCGGgccUCCCCuGGGGGCCUcgGgggcGGAg -3' miRNA: 3'- uGCCa--GGGGGuCCUCCGGAaaCa---CCU- -5' |
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29021 | 5' | -59.7 | NC_006146.1 | + | 117787 | 0.67 | 0.726436 |
Target: 5'- cGCGcUCCCCCGGGccGGGCCgccuccGGAc -3' miRNA: 3'- -UGCcAGGGGGUCC--UCCGGaaaca-CCU- -5' |
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29021 | 5' | -59.7 | NC_006146.1 | + | 58903 | 0.67 | 0.726436 |
Target: 5'- cUGGUCUCCCucucuGGAcccuGGUgUUUGUGGGc -3' miRNA: 3'- uGCCAGGGGGu----CCU----CCGgAAACACCU- -5' |
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29021 | 5' | -59.7 | NC_006146.1 | + | 137970 | 0.67 | 0.716818 |
Target: 5'- cGCGGccgggCCUCCcGGGGGCCcggcgggGUGGGg -3' miRNA: 3'- -UGCCa----GGGGGuCCUCCGGaaa----CACCU- -5' |
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29021 | 5' | -59.7 | NC_006146.1 | + | 11555 | 0.67 | 0.697386 |
Target: 5'- aGCGGUCCCUaaGGGGGGCUgcuaaGGAc -3' miRNA: 3'- -UGCCAGGGGg-UCCUCCGGaaacaCCU- -5' |
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29021 | 5' | -59.7 | NC_006146.1 | + | 139146 | 0.68 | 0.687588 |
Target: 5'- aACGGgggcucccgUCCCCCGGGGGGgCgccUGUGaGGc -3' miRNA: 3'- -UGCC---------AGGGGGUCCUCCgGaa-ACAC-CU- -5' |
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29021 | 5' | -59.7 | NC_006146.1 | + | 53408 | 0.68 | 0.664903 |
Target: 5'- cUGG-CCUCCAGGAGGCCaaaucauaugaaucUgcugguggUUGUGGAu -3' miRNA: 3'- uGCCaGGGGGUCCUCCGG--------------A--------AACACCU- -5' |
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29021 | 5' | -59.7 | NC_006146.1 | + | 64107 | 0.68 | 0.648044 |
Target: 5'- -gGGUCCUCgAGGAuGGCacggGUGGAg -3' miRNA: 3'- ugCCAGGGGgUCCU-CCGgaaaCACCU- -5' |
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29021 | 5' | -59.7 | NC_006146.1 | + | 33195 | 0.68 | 0.638109 |
Target: 5'- cCGGgcaCCCCCgggGGGAGGCCggagggGGAg -3' miRNA: 3'- uGCCa--GGGGG---UCCUCCGGaaaca-CCU- -5' |
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29021 | 5' | -59.7 | NC_006146.1 | + | 113639 | 0.69 | 0.609299 |
Target: 5'- gACGGUgCUCCGGGGgauGGCCUUgcugaccacgggcccGUGGAc -3' miRNA: 3'- -UGCCAgGGGGUCCU---CCGGAAa--------------CACCU- -5' |
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29021 | 5' | -59.7 | NC_006146.1 | + | 144868 | 0.69 | 0.58851 |
Target: 5'- -gGGUCCCuCCGGccGGCCUg-GUGGAc -3' miRNA: 3'- ugCCAGGG-GGUCcuCCGGAaaCACCU- -5' |
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29021 | 5' | -59.7 | NC_006146.1 | + | 147946 | 0.69 | 0.58851 |
Target: 5'- -gGGUCCCuCCGGccGGCCUg-GUGGAc -3' miRNA: 3'- ugCCAGGG-GGUCcuCCGGAaaCACCU- -5' |
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29021 | 5' | -59.7 | NC_006146.1 | + | 151024 | 0.69 | 0.58851 |
Target: 5'- -gGGUCCCuCCGGccGGCCUg-GUGGAc -3' miRNA: 3'- ugCCAGGG-GGUCcuCCGGAaaCACCU- -5' |
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29021 | 5' | -59.7 | NC_006146.1 | + | 154102 | 0.69 | 0.58851 |
Target: 5'- -gGGUCCCuCCGGccGGCCUg-GUGGAc -3' miRNA: 3'- ugCCAGGG-GGUCcuCCGGAaaCACCU- -5' |
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29021 | 5' | -59.7 | NC_006146.1 | + | 157180 | 0.69 | 0.58851 |
Target: 5'- -gGGUCCCuCCGGccGGCCUg-GUGGAc -3' miRNA: 3'- ugCCAGGG-GGUCcuCCGGAaaCACCU- -5' |
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29021 | 5' | -59.7 | NC_006146.1 | + | 141790 | 0.69 | 0.58851 |
Target: 5'- -gGGUCCCuCCGGccGGCCUg-GUGGAc -3' miRNA: 3'- ugCCAGGG-GGUCcuCCGGAaaCACCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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