miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29022 3' -51.9 NC_006146.1 + 42252 0.67 0.969429
Target:  5'- cCCuccGGCgCGAGGAGCUGGcucagcUGGGCg-- -3'
miRNA:   3'- -GGua-CCG-GCUCUUCGACC------ACUUGaaa -5'
29022 3' -51.9 NC_006146.1 + 4416 0.67 0.969429
Target:  5'- uCCGgacGGUCcAGggGCUGGUGAAa--- -3'
miRNA:   3'- -GGUa--CCGGcUCuuCGACCACUUgaaa -5'
29022 3' -51.9 NC_006146.1 + 156822 0.68 0.966257
Target:  5'- -gGUGGCCGGGGAGg-GGUGGGg--- -3'
miRNA:   3'- ggUACCGGCUCUUCgaCCACUUgaaa -5'
29022 3' -51.9 NC_006146.1 + 141433 0.68 0.966257
Target:  5'- -gGUGGCCGGGGAGg-GGUGGGg--- -3'
miRNA:   3'- ggUACCGGCUCUUCgaCCACUUgaaa -5'
29022 3' -51.9 NC_006146.1 + 144511 0.68 0.966257
Target:  5'- -gGUGGCCGGGGAGg-GGUGGGg--- -3'
miRNA:   3'- ggUACCGGCUCUUCgaCCACUUgaaa -5'
29022 3' -51.9 NC_006146.1 + 147589 0.68 0.966257
Target:  5'- -gGUGGCCGGGGAGg-GGUGGGg--- -3'
miRNA:   3'- ggUACCGGCUCUUCgaCCACUUgaaa -5'
29022 3' -51.9 NC_006146.1 + 153744 0.68 0.966257
Target:  5'- -gGUGGCCGGGGAGg-GGUGGGg--- -3'
miRNA:   3'- ggUACCGGCUCUUCgaCCACUUgaaa -5'
29022 3' -51.9 NC_006146.1 + 150667 0.68 0.966257
Target:  5'- -gGUGGCCGGGGAGg-GGUGGGg--- -3'
miRNA:   3'- ggUACCGGCUCUUCgaCCACUUgaaa -5'
29022 3' -51.9 NC_006146.1 + 66477 0.68 0.962859
Target:  5'- aCCAUguggGGCaugGGGAGGCUGGUGcuGACg-- -3'
miRNA:   3'- -GGUA----CCGg--CUCUUCGACCAC--UUGaaa -5'
29022 3' -51.9 NC_006146.1 + 61474 0.68 0.959231
Target:  5'- gCCGUGGCCGAGuGGCaGGaucaccaGGGCUc- -3'
miRNA:   3'- -GGUACCGGCUCuUCGaCCa------CUUGAaa -5'
29022 3' -51.9 NC_006146.1 + 138802 0.68 0.955366
Target:  5'- uUCGgaugGGCCc-GggGUUGGUGAGCUa- -3'
miRNA:   3'- -GGUa---CCGGcuCuuCGACCACUUGAaa -5'
29022 3' -51.9 NC_006146.1 + 110476 0.68 0.946909
Target:  5'- gCCAUGGCCaGGAAGgUGaauagGAACUUg -3'
miRNA:   3'- -GGUACCGGcUCUUCgACca---CUUGAAa -5'
29022 3' -51.9 NC_006146.1 + 133663 0.69 0.942309
Target:  5'- gCAUGGCCGGGGAGCUuuuugGGAUa-- -3'
miRNA:   3'- gGUACCGGCUCUUCGAcca--CUUGaaa -5'
29022 3' -51.9 NC_006146.1 + 170574 0.69 0.941835
Target:  5'- cCCGuUGGCCGGGAgaaugacAGCUGGgcguggcGAGCg-- -3'
miRNA:   3'- -GGU-ACCGGCUCU-------UCGACCa------CUUGaaa -5'
29022 3' -51.9 NC_006146.1 + 125619 0.69 0.937457
Target:  5'- aCCGaGGgUGGGGcaugGGCUGGUGAGCg-- -3'
miRNA:   3'- -GGUaCCgGCUCU----UCGACCACUUGaaa -5'
29022 3' -51.9 NC_006146.1 + 105193 0.69 0.937457
Target:  5'- aCCggGGCCGGGGAGCcGG-GggUg-- -3'
miRNA:   3'- -GGuaCCGGCUCUUCGaCCaCuuGaaa -5'
29022 3' -51.9 NC_006146.1 + 114787 0.69 0.934425
Target:  5'- cCCGcGGCCaccuucgccuucgugGAGGAGCUGGUGGccgacaccuACUUg -3'
miRNA:   3'- -GGUaCCGG---------------CUCUUCGACCACU---------UGAAa -5'
29022 3' -51.9 NC_006146.1 + 15712 0.69 0.926994
Target:  5'- gCCAcUGGCCGAGGAGa-GG-GGGCUg- -3'
miRNA:   3'- -GGU-ACCGGCUCUUCgaCCaCUUGAaa -5'
29022 3' -51.9 NC_006146.1 + 144605 0.69 0.92138
Target:  5'- ---gGGCCuGGGAGGCUGGUucuggggcuGGACUUg -3'
miRNA:   3'- gguaCCGG-CUCUUCGACCA---------CUUGAAa -5'
29022 3' -51.9 NC_006146.1 + 150760 0.69 0.92138
Target:  5'- ---gGGCCuGGGAGGCUGGUucuggggcuGGACUUg -3'
miRNA:   3'- gguaCCGG-CUCUUCGACCA---------CUUGAAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.