Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 29022 | 5' | -51.2 | NC_006146.1 | + | 133086 | 0.66 | 0.990223 |
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Target: 5'- gGGGgUGGUC-CC-GCUccGAGAGCUu -3' miRNA: 3'- aCUUgACCAGuGGuCGAaaCUCUCGG- -5' |
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| 29022 | 5' | -51.2 | NC_006146.1 | + | 46783 | 0.66 | 0.990223 |
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Target: 5'- gGAugGCUGGcCgGCCGGCgc-GAGGGCa -3' miRNA: 3'- aCU--UGACCaG-UGGUCGaaaCUCUCGg -5' |
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| 29022 | 5' | -51.2 | NC_006146.1 | + | 53770 | 0.66 | 0.990223 |
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Target: 5'- cGGGCggaGGUCucGCCGGac--GAGGGCCu -3' miRNA: 3'- aCUUGa--CCAG--UGGUCgaaaCUCUCGG- -5' |
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| 29022 | 5' | -51.2 | NC_006146.1 | + | 125791 | 0.66 | 0.991457 |
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Target: 5'- -cGGC-GGUCACCGGCc----GAGCCg -3' miRNA: 3'- acUUGaCCAGUGGUCGaaacuCUCGG- -5' |
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| 29022 | 5' | -51.2 | NC_006146.1 | + | 125598 | 0.66 | 0.991457 |
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Target: 5'- gGAGCUGuUCuCCGGCUUUccaccGAGGGUg -3' miRNA: 3'- aCUUGACcAGuGGUCGAAA-----CUCUCGg -5' |
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| 29022 | 5' | -51.2 | NC_006146.1 | + | 17786 | 0.66 | 0.991457 |
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Target: 5'- aGAGCaugagGGUCcCgGGCUccGAGAGCa -3' miRNA: 3'- aCUUGa----CCAGuGgUCGAaaCUCUCGg -5' |
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| 29022 | 5' | -51.2 | NC_006146.1 | + | 65537 | 0.66 | 0.992564 |
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Target: 5'- aGAcCUGGUgGcCCAGCaacucAGAGCCu -3' miRNA: 3'- aCUuGACCAgU-GGUCGaaac-UCUCGG- -5' |
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| 29022 | 5' | -51.2 | NC_006146.1 | + | 10231 | 0.66 | 0.994436 |
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Target: 5'- ---cCUGGUCauguGCCGGCUccUGAaGGCCu -3' miRNA: 3'- acuuGACCAG----UGGUCGAa-ACUcUCGG- -5' |
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| 29022 | 5' | -51.2 | NC_006146.1 | + | 126857 | 0.66 | 0.994436 |
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Target: 5'- aGGACgcuccaGGUCGaguucCCGGCUUU--GAGCCa -3' miRNA: 3'- aCUUGa-----CCAGU-----GGUCGAAAcuCUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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