miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29022 5' -51.2 NC_006146.1 + 52125 0.68 0.97471
Target:  5'- --cGCUGGaCACCAGCUc---GGGCCc -3'
miRNA:   3'- acuUGACCaGUGGUCGAaacuCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 4480 0.67 0.979654
Target:  5'- gGGGCUGGUUACguGuCUUgugGAGAuggcacuggcggGCCa -3'
miRNA:   3'- aCUUGACCAGUGguC-GAAa--CUCU------------CGG- -5'
29022 5' -51.2 NC_006146.1 + 46934 0.67 0.979654
Target:  5'- gGGACUcGGUCuCCAGCcacaGGGuGCCc -3'
miRNA:   3'- aCUUGA-CCAGuGGUCGaaa-CUCuCGG- -5'
29022 5' -51.2 NC_006146.1 + 67904 0.67 0.979654
Target:  5'- cGAACUGG--GCCucg--UGGGAGCCg -3'
miRNA:   3'- aCUUGACCagUGGucgaaACUCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 62108 0.67 0.985671
Target:  5'- aGGACUGcUCGCCucGGCgg-GAGAccuGCCa -3'
miRNA:   3'- aCUUGACcAGUGG--UCGaaaCUCU---CGG- -5'
29022 5' -51.2 NC_006146.1 + 4332 0.67 0.987339
Target:  5'- aGGGCgGGUCGCU--CUUUGAGcAGCUc -3'
miRNA:   3'- aCUUGaCCAGUGGucGAAACUC-UCGG- -5'
29022 5' -51.2 NC_006146.1 + 129465 0.67 0.987339
Target:  5'- ----aUGGUgcaaGCUAGCgagGAGAGCCg -3'
miRNA:   3'- acuugACCAg---UGGUCGaaaCUCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 167304 0.67 0.987339
Target:  5'- gGGGCcGG-CGCCuGCaggGGGGGCCg -3'
miRNA:   3'- aCUUGaCCaGUGGuCGaaaCUCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 153423 0.68 0.968944
Target:  5'- gGGGCgGGUgugGCUGGCUUUGgaGGGGCCg -3'
miRNA:   3'- aCUUGaCCAg--UGGUCGAAAC--UCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 93437 0.68 0.968944
Target:  5'- cUGGGCcuuggcuaUGGUCaugGCCAGCUU--GGAGCUg -3'
miRNA:   3'- -ACUUG--------ACCAG---UGGUCGAAacUCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 71816 0.74 0.749513
Target:  5'- gGGACUGGUUGCCA-CUgaUGuAGAGCCg -3'
miRNA:   3'- aCUUGACCAGUGGUcGAa-AC-UCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 154593 0.74 0.778864
Target:  5'- gGAAgaGGUCGCCguGGCUg-GAGAGCUc -3'
miRNA:   3'- aCUUgaCCAGUGG--UCGAaaCUCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 47054 0.72 0.866183
Target:  5'- gGGGCcGGUCGCCGGUgucggUGAGGgggcGCCu -3'
miRNA:   3'- aCUUGaCCAGUGGUCGaa---ACUCU----CGG- -5'
29022 5' -51.2 NC_006146.1 + 96074 0.71 0.888346
Target:  5'- gGAGCUGcaCACCAGgaUUaAGAGCCu -3'
miRNA:   3'- aCUUGACcaGUGGUCgaAAcUCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 161635 0.71 0.895259
Target:  5'- cUGAGCUGGUgGCCuuAGUUUgcUGuGGGCUg -3'
miRNA:   3'- -ACUUGACCAgUGG--UCGAA--ACuCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 52806 0.7 0.919847
Target:  5'- gGGACUGGUUGcacgaggccgugcCCAGgaUgcgGAGGGCCg -3'
miRNA:   3'- aCUUGACCAGU-------------GGUCgaAa--CUCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 157678 0.7 0.922721
Target:  5'- aGAACUGGUCugGCCgcaggccuucaggauGGCgUUGuuGAGCCg -3'
miRNA:   3'- aCUUGACCAG--UGG---------------UCGaAACu-CUCGG- -5'
29022 5' -51.2 NC_006146.1 + 128326 0.7 0.941537
Target:  5'- cGGGCUGGUCcuGCUGGCccugGAGAugaaGCCg -3'
miRNA:   3'- aCUUGACCAG--UGGUCGaaa-CUCU----CGG- -5'
29022 5' -51.2 NC_006146.1 + 129049 0.69 0.95863
Target:  5'- cGAGCUGGgcccagaCGCCGGCgcaGAcAGCCc -3'
miRNA:   3'- aCUUGACCa------GUGGUCGaaaCUcUCGG- -5'
29022 5' -51.2 NC_006146.1 + 145199 0.68 0.968633
Target:  5'- gGGGCUGG-C-CCGGCUUccacuccUGAGGGUa -3'
miRNA:   3'- aCUUGACCaGuGGUCGAA-------ACUCUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.