Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29022 | 5' | -51.2 | NC_006146.1 | + | 46934 | 0.67 | 0.979654 |
Target: 5'- gGGACUcGGUCuCCAGCcacaGGGuGCCc -3' miRNA: 3'- aCUUGA-CCAGuGGUCGaaa-CUCuCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 117014 | 0.68 | 0.977281 |
Target: 5'- cUGGAcCUGGgcuaCGCCcuaacgggGGCgcUGAGGGCCa -3' miRNA: 3'- -ACUU-GACCa---GUGG--------UCGaaACUCUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 52125 | 0.68 | 0.97471 |
Target: 5'- --cGCUGGaCACCAGCUc---GGGCCc -3' miRNA: 3'- acuUGACCaGUGGUCGAaacuCUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 39065 | 0.68 | 0.97471 |
Target: 5'- gUGAA-UGGUCGCCGGCcuccggucUGGGgaaGGCCa -3' miRNA: 3'- -ACUUgACCAGUGGUCGaa------ACUC---UCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 139444 | 0.68 | 0.97471 |
Target: 5'- aGGACUGG-UACCugagAGCU--GAGAGUCu -3' miRNA: 3'- aCUUGACCaGUGG----UCGAaaCUCUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 70170 | 0.68 | 0.971933 |
Target: 5'- gGcGCUGGUgGCCGGC---GAG-GCCg -3' miRNA: 3'- aCuUGACCAgUGGUCGaaaCUCuCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 93437 | 0.68 | 0.968944 |
Target: 5'- cUGGGCcuuggcuaUGGUCaugGCCAGCUU--GGAGCUg -3' miRNA: 3'- -ACUUG--------ACCAG---UGGUCGAAacUCUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 153423 | 0.68 | 0.968944 |
Target: 5'- gGGGCgGGUgugGCUGGCUUUGgaGGGGCCg -3' miRNA: 3'- aCUUGaCCAg--UGGUCGAAAC--UCUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 145199 | 0.68 | 0.968633 |
Target: 5'- gGGGCUGG-C-CCGGCUUccacuccUGAGGGUa -3' miRNA: 3'- aCUUGACCaGuGGUCGAA-------ACUCUCGg -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 40068 | 0.69 | 0.962299 |
Target: 5'- aGGACaGcGUCucCCGGCg--GAGGGCCu -3' miRNA: 3'- aCUUGaC-CAGu-GGUCGaaaCUCUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 14312 | 0.69 | 0.962299 |
Target: 5'- gGAGCUGGcgCACCuGCUggaGAacucacgcaGGGCCg -3' miRNA: 3'- aCUUGACCa-GUGGuCGAaa-CU---------CUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 129049 | 0.69 | 0.95863 |
Target: 5'- cGAGCUGGgcccagaCGCCGGCgcaGAcAGCCc -3' miRNA: 3'- aCUUGACCa------GUGGUCGaaaCUcUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 10814 | 0.69 | 0.954724 |
Target: 5'- --cGCUGGgCACCGGCUacacGGGCCa -3' miRNA: 3'- acuUGACCaGUGGUCGAaacuCUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 114813 | 0.69 | 0.950576 |
Target: 5'- gGAGCUGGUgGCCgacaccuacuuGGCccggUGGGAcGCCu -3' miRNA: 3'- aCUUGACCAgUGG-----------UCGaa--ACUCU-CGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 128326 | 0.7 | 0.941537 |
Target: 5'- cGGGCUGGUCcuGCUGGCccugGAGAugaaGCCg -3' miRNA: 3'- aCUUGACCAG--UGGUCGaaa-CUCU----CGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 72522 | 0.7 | 0.936641 |
Target: 5'- gGAGCggacGG-CugCGGCUcucgGGGAGCCa -3' miRNA: 3'- aCUUGa---CCaGugGUCGAaa--CUCUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 10334 | 0.7 | 0.926087 |
Target: 5'- aUGcAGCUcaUCAUCAGCgugcUGAGAGCCg -3' miRNA: 3'- -AC-UUGAccAGUGGUCGaa--ACUCUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 85546 | 0.7 | 0.926087 |
Target: 5'- cGAACUGGcCACCAcCUUaGAGA-CCa -3' miRNA: 3'- aCUUGACCaGUGGUcGAAaCUCUcGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 157678 | 0.7 | 0.922721 |
Target: 5'- aGAACUGGUCugGCCgcaggccuucaggauGGCgUUGuuGAGCCg -3' miRNA: 3'- aCUUGACCAG--UGG---------------UCGaAACu-CUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 52806 | 0.7 | 0.919847 |
Target: 5'- gGGACUGGUUGcacgaggccgugcCCAGgaUgcgGAGGGCCg -3' miRNA: 3'- aCUUGACCAGU-------------GGUCgaAa--CUCUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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