miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29023 3' -52.2 NC_006146.1 + 155910 0.66 0.985935
Target:  5'- cGCUuGGGUCUCCccuaGGCUUgGaUGGCGGa -3'
miRNA:   3'- -CGGuUCUAGAGGa---CCGAAgC-ACUGUU- -5'
29023 3' -52.2 NC_006146.1 + 152832 0.66 0.985935
Target:  5'- cGCUuGGGUCUCCcuuaGGCUUgGaUGGCGGa -3'
miRNA:   3'- -CGGuUCUAGAGGa---CCGAAgC-ACUGUU- -5'
29023 3' -52.2 NC_006146.1 + 149754 0.66 0.985935
Target:  5'- cGCUuGGGUCUCCcuuaGGCUUgGaUGGCGGa -3'
miRNA:   3'- -CGGuUCUAGAGGa---CCGAAgC-ACUGUU- -5'
29023 3' -52.2 NC_006146.1 + 143599 0.66 0.985935
Target:  5'- cGCUuGGGUCUCCcuuaGGCUUgGaUGGCGGa -3'
miRNA:   3'- -CGGuUCUAGAGGa---CCGAAgC-ACUGUU- -5'
29023 3' -52.2 NC_006146.1 + 120551 0.66 0.985935
Target:  5'- gGCCAAGAUCcCCaGGCUggcCGaggccgcggaUGGCAAg -3'
miRNA:   3'- -CGGUUCUAGaGGaCCGAa--GC----------ACUGUU- -5'
29023 3' -52.2 NC_006146.1 + 39789 0.66 0.984131
Target:  5'- gGCCcGGAgCUCCcGGCUUCuggGACGg -3'
miRNA:   3'- -CGGuUCUaGAGGaCCGAAGca-CUGUu -5'
29023 3' -52.2 NC_006146.1 + 115351 0.66 0.982157
Target:  5'- aUCGAGGccUUCCUGGCcggCGUGGCGg -3'
miRNA:   3'- cGGUUCUa-GAGGACCGaa-GCACUGUu -5'
29023 3' -52.2 NC_006146.1 + 123704 0.66 0.980003
Target:  5'- gGCCAGGGg--CCUGGCgcUCGgGGCGg -3'
miRNA:   3'- -CGGUUCUagaGGACCGa-AGCaCUGUu -5'
29023 3' -52.2 NC_006146.1 + 41856 0.66 0.980003
Target:  5'- gGCCAGGggCUaCCggGGCcUCGUGAa-- -3'
miRNA:   3'- -CGGUUCuaGA-GGa-CCGaAGCACUguu -5'
29023 3' -52.2 NC_006146.1 + 98912 0.66 0.977661
Target:  5'- cGCCAGGGUCUCCUccaaaggaugGGCggaggUCGgcgccACGAa -3'
miRNA:   3'- -CGGUUCUAGAGGA----------CCGa----AGCac---UGUU- -5'
29023 3' -52.2 NC_006146.1 + 44953 0.66 0.977661
Target:  5'- cGCC-AGAccccuUCUCCUGGCUccgcaagaccUCGUG-CGc -3'
miRNA:   3'- -CGGuUCU-----AGAGGACCGA----------AGCACuGUu -5'
29023 3' -52.2 NC_006146.1 + 110209 0.67 0.972382
Target:  5'- aCCAGGAUCUUCUccGGCaggGUGACGg -3'
miRNA:   3'- cGGUUCUAGAGGA--CCGaagCACUGUu -5'
29023 3' -52.2 NC_006146.1 + 107549 0.67 0.972382
Target:  5'- uGCCcaGGGGUC-CCagGGCUUCGUGGa-- -3'
miRNA:   3'- -CGG--UUCUAGaGGa-CCGAAGCACUguu -5'
29023 3' -52.2 NC_006146.1 + 146677 0.67 0.966257
Target:  5'- cGCUuGGGUCUCCcuuaGGCUUgGaUGGCGAg -3'
miRNA:   3'- -CGGuUCUAGAGGa---CCGAAgC-ACUGUU- -5'
29023 3' -52.2 NC_006146.1 + 3724 0.68 0.95126
Target:  5'- -aCAGGGUCUCUgggGGCcgCGUGGCc- -3'
miRNA:   3'- cgGUUCUAGAGGa--CCGaaGCACUGuu -5'
29023 3' -52.2 NC_006146.1 + 121841 0.68 0.942309
Target:  5'- uCCcGGGUCUCCUGGCUgucuacgaCGcGACGGu -3'
miRNA:   3'- cGGuUCUAGAGGACCGAa-------GCaCUGUU- -5'
29023 3' -52.2 NC_006146.1 + 42360 0.69 0.926994
Target:  5'- aGCCGGGAcgUCUUCgUGGCggUCGUGAg-- -3'
miRNA:   3'- -CGGUUCU--AGAGG-ACCGa-AGCACUguu -5'
29023 3' -52.2 NC_006146.1 + 117493 0.69 0.926444
Target:  5'- gGCCGAGAgacucgcggucauUCUCCUGGCUaac-GGCAGg -3'
miRNA:   3'- -CGGUUCU-------------AGAGGACCGAagcaCUGUU- -5'
29023 3' -52.2 NC_006146.1 + 64478 0.7 0.889532
Target:  5'- cGCuCAGGGUCUCCaccaccuuguugUGGCggacCGUGGCAc -3'
miRNA:   3'- -CG-GUUCUAGAGG------------ACCGaa--GCACUGUu -5'
29023 3' -52.2 NC_006146.1 + 9608 0.72 0.79939
Target:  5'- cGCUAAGcagCUCCU-GCUUCGUGACc- -3'
miRNA:   3'- -CGGUUCua-GAGGAcCGAAGCACUGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.