miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29023 5' -57 NC_006146.1 + 74256 0.66 0.906467
Target:  5'- gGCCGUCuCCCcggGCUGGccaaAGAGccgguugcGGUCCa -3'
miRNA:   3'- aCGGCAGuGGGa--CGGCC----UCUU--------CUAGG- -5'
29023 5' -57 NC_006146.1 + 43925 0.66 0.906467
Target:  5'- cG-CGUCGCCCggcaGUCGGGcGGGGUCUa -3'
miRNA:   3'- aCgGCAGUGGGa---CGGCCUcUUCUAGG- -5'
29023 5' -57 NC_006146.1 + 68879 0.66 0.906467
Target:  5'- aGCC-UgGCCCUGauggagaUGGAGAAGGUggCCa -3'
miRNA:   3'- aCGGcAgUGGGACg------GCCUCUUCUA--GG- -5'
29023 5' -57 NC_006146.1 + 66447 0.66 0.906467
Target:  5'- aGCCGcagCugCCUGCC-GAG-GGcgCCg -3'
miRNA:   3'- aCGGCa--GugGGACGGcCUCuUCuaGG- -5'
29023 5' -57 NC_006146.1 + 47699 0.66 0.900299
Target:  5'- cUGCUGUCcaccGCCCUGUgcuCGGcccucgagauugGGGAGGUCUu -3'
miRNA:   3'- -ACGGCAG----UGGGACG---GCC------------UCUUCUAGG- -5'
29023 5' -57 NC_006146.1 + 125228 0.66 0.900299
Target:  5'- aGCCcuUCcgcuCCCUGgCGGAGAcGGUCUc -3'
miRNA:   3'- aCGGc-AGu---GGGACgGCCUCUuCUAGG- -5'
29023 5' -57 NC_006146.1 + 126512 0.66 0.89967
Target:  5'- cGCCGUgcccggccccacaCGCCCc-CCGGGcGggGGUCUg -3'
miRNA:   3'- aCGGCA-------------GUGGGacGGCCU-CuuCUAGG- -5'
29023 5' -57 NC_006146.1 + 42310 0.66 0.898405
Target:  5'- aGCCGgagUGCCCUGCgaGGuugcugacuggcccGGGAGGUCa -3'
miRNA:   3'- aCGGCa--GUGGGACGg-CC--------------UCUUCUAGg -5'
29023 5' -57 NC_006146.1 + 123948 0.66 0.89649
Target:  5'- gGCCGgcgaaauacgcgggCACCCUgugGCUGGAGAccgaGUCCc -3'
miRNA:   3'- aCGGCa-------------GUGGGA---CGGCCUCUuc--UAGG- -5'
29023 5' -57 NC_006146.1 + 160678 0.66 0.893907
Target:  5'- gGCCGgCACaugaCCaggGCCGGuAGAggcAGGUCCg -3'
miRNA:   3'- aCGGCaGUG----GGa--CGGCC-UCU---UCUAGG- -5'
29023 5' -57 NC_006146.1 + 110238 0.66 0.893907
Target:  5'- aGCCGcCACCUUGUCacgaagccAGGAGAUCUu -3'
miRNA:   3'- aCGGCaGUGGGACGGcc------UCUUCUAGG- -5'
29023 5' -57 NC_006146.1 + 137161 0.66 0.893907
Target:  5'- aGCgGaccaCACCCaccgGaCCGGAGGAGcUCCa -3'
miRNA:   3'- aCGgCa---GUGGGa---C-GGCCUCUUCuAGG- -5'
29023 5' -57 NC_006146.1 + 14314 0.66 0.893907
Target:  5'- aGCUGgCGCaCCUGCUGGAGAAc---- -3'
miRNA:   3'- aCGGCaGUG-GGACGGCCUCUUcuagg -5'
29023 5' -57 NC_006146.1 + 137206 0.66 0.887294
Target:  5'- gGCCGggCACaCC--CCGGGGAGGAagCCg -3'
miRNA:   3'- aCGGCa-GUG-GGacGGCCUCUUCUa-GG- -5'
29023 5' -57 NC_006146.1 + 32127 0.66 0.887294
Target:  5'- gUGCCacGUCACCCcggggUGCUGGgguGGggGAUg- -3'
miRNA:   3'- -ACGG--CAGUGGG-----ACGGCC---UCuuCUAgg -5'
29023 5' -57 NC_006146.1 + 135957 0.66 0.887294
Target:  5'- gUGCCacGUCACCCcggggUGCUGGgguGGggGAUg- -3'
miRNA:   3'- -ACGG--CAGUGGG-----ACGGCC---UCuuCUAgg -5'
29023 5' -57 NC_006146.1 + 101227 0.66 0.880463
Target:  5'- aGCCuUCAgauaugccacccCCCaGCUGGAGGAGGaCCg -3'
miRNA:   3'- aCGGcAGU------------GGGaCGGCCUCUUCUaGG- -5'
29023 5' -57 NC_006146.1 + 42116 0.66 0.880463
Target:  5'- gGCCGaUCacgcuucgGCCCUGCUGGccacacuccAGAAGAaggCCu -3'
miRNA:   3'- aCGGC-AG--------UGGGACGGCC---------UCUUCUa--GG- -5'
29023 5' -57 NC_006146.1 + 157025 0.66 0.880463
Target:  5'- gGCCGUcCACUCUaucccGCUGGAGGcaauGGUCg -3'
miRNA:   3'- aCGGCA-GUGGGA-----CGGCCUCUu---CUAGg -5'
29023 5' -57 NC_006146.1 + 47056 0.67 0.87342
Target:  5'- gGCCgGUCGCCggUGUCGGuGAGGGggcgCCu -3'
miRNA:   3'- aCGG-CAGUGGg-ACGGCCuCUUCUa---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.