miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29023 5' -57 NC_006146.1 + 60688 1.11 0.001946
Target:  5'- cUGCCGUCACCCUGCCGGAGAAGAUCCu -3'
miRNA:   3'- -ACGGCAGUGGGACGGCCUCUUCUAGG- -5'
29023 5' -57 NC_006146.1 + 103126 0.79 0.269286
Target:  5'- cGCCGUCAcguCCCUggccgaGCUGGGGGAGGUCUu -3'
miRNA:   3'- aCGGCAGU---GGGA------CGGCCUCUUCUAGG- -5'
29023 5' -57 NC_006146.1 + 125908 0.78 0.295287
Target:  5'- gGCC-UCACCgaGCUGGAGAgaaGGGUCCg -3'
miRNA:   3'- aCGGcAGUGGgaCGGCCUCU---UCUAGG- -5'
29023 5' -57 NC_006146.1 + 14345 0.78 0.295287
Target:  5'- gGCCGUUgcgGCCCUGCUGGuGGggucGGGUCCc -3'
miRNA:   3'- aCGGCAG---UGGGACGGCCuCU----UCUAGG- -5'
29023 5' -57 NC_006146.1 + 57210 0.78 0.309003
Target:  5'- cGCCGUC-CCCggGCCGGAGGccGGGcCCg -3'
miRNA:   3'- aCGGCAGuGGGa-CGGCCUCU--UCUaGG- -5'
29023 5' -57 NC_006146.1 + 74873 0.76 0.392989
Target:  5'- gGCCGgCACCaUGCCGGuGGcacAGAUCCa -3'
miRNA:   3'- aCGGCaGUGGgACGGCCuCU---UCUAGG- -5'
29023 5' -57 NC_006146.1 + 52851 0.75 0.444639
Target:  5'- cGCCGcCGCCCccGcCCGGGGGcuccAGGUCCg -3'
miRNA:   3'- aCGGCaGUGGGa-C-GGCCUCU----UCUAGG- -5'
29023 5' -57 NC_006146.1 + 104036 0.74 0.453613
Target:  5'- -cCCGgggggCGCCCUggacGCUGGAGGAGAUCUa -3'
miRNA:   3'- acGGCa----GUGGGA----CGGCCUCUUCUAGG- -5'
29023 5' -57 NC_006146.1 + 128538 0.74 0.462685
Target:  5'- cGCC--CACCCUGgCGGcgcGGGAGAUCCu -3'
miRNA:   3'- aCGGcaGUGGGACgGCC---UCUUCUAGG- -5'
29023 5' -57 NC_006146.1 + 137876 0.74 0.47185
Target:  5'- gGCCc-CGCCCcggGCCGGcAGggGGUCCc -3'
miRNA:   3'- aCGGcaGUGGGa--CGGCC-UCuuCUAGG- -5'
29023 5' -57 NC_006146.1 + 97820 0.72 0.561901
Target:  5'- cUGCUGUcCACCCUGgugaaguaccacgacCUGGAGGAGGgggCCg -3'
miRNA:   3'- -ACGGCA-GUGGGAC---------------GGCCUCUUCUa--GG- -5'
29023 5' -57 NC_006146.1 + 61594 0.72 0.587728
Target:  5'- aGCCGgcugcagCGgCCgcgGCCGGGGccGAGAUCCc -3'
miRNA:   3'- aCGGCa------GUgGGa--CGGCCUC--UUCUAGG- -5'
29023 5' -57 NC_006146.1 + 42257 0.72 0.607743
Target:  5'- cGCCGUC-CCCgaaUGCgGGAGGAGGa-- -3'
miRNA:   3'- aCGGCAGuGGG---ACGgCCUCUUCUagg -5'
29023 5' -57 NC_006146.1 + 56513 0.71 0.647926
Target:  5'- cUGCCcaCGCCCaucgCGGAGGAGGUCCu -3'
miRNA:   3'- -ACGGcaGUGGGacg-GCCUCUUCUAGG- -5'
29023 5' -57 NC_006146.1 + 94595 0.71 0.667975
Target:  5'- aGUCuUCACCCUGaCCGGAGu-GAaCCa -3'
miRNA:   3'- aCGGcAGUGGGAC-GGCCUCuuCUaGG- -5'
29023 5' -57 NC_006146.1 + 69683 0.7 0.684932
Target:  5'- aGCUGUUGCCCaggGCCaggaacacgcugagGGAGAAGA-CCa -3'
miRNA:   3'- aCGGCAGUGGGa--CGG--------------CCUCUUCUaGG- -5'
29023 5' -57 NC_006146.1 + 136977 0.7 0.697819
Target:  5'- gGaCCG-CACCCaccgGaCCGGAGGAGcUCCa -3'
miRNA:   3'- aC-GGCaGUGGGa---C-GGCCUCUUCuAGG- -5'
29023 5' -57 NC_006146.1 + 47914 0.7 0.707671
Target:  5'- aGaaGUCcCCCgugGCCuGGAGGAGAUCg -3'
miRNA:   3'- aCggCAGuGGGa--CGG-CCUCUUCUAGg -5'
29023 5' -57 NC_006146.1 + 167797 0.7 0.713553
Target:  5'- gUGCCGgauagagGCCGGAGAAGAgcUCCa -3'
miRNA:   3'- -ACGGCagugggaCGGCCUCUUCU--AGG- -5'
29023 5' -57 NC_006146.1 + 145728 0.7 0.727183
Target:  5'- aGCUugauGUCGCUCUgGCCGGGcAGGAUCUg -3'
miRNA:   3'- aCGG----CAGUGGGA-CGGCCUcUUCUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.