miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29023 5' -57 NC_006146.1 + 53419 0.67 0.866169
Target:  5'- cGCgaGUCuCUCgGCC-GAGAGGAUCCg -3'
miRNA:   3'- aCGg-CAGuGGGaCGGcCUCUUCUAGG- -5'
29023 5' -57 NC_006146.1 + 102739 0.67 0.866169
Target:  5'- cGCUG-CGCCUgcCCGGGGAGGAggcagCCc -3'
miRNA:   3'- aCGGCaGUGGGacGGCCUCUUCUa----GG- -5'
29023 5' -57 NC_006146.1 + 123041 0.67 0.866169
Target:  5'- gGCCcagGUCcggGCgCUGgaGGAGAGGGUCCu -3'
miRNA:   3'- aCGG---CAG---UGgGACggCCUCUUCUAGG- -5'
29023 5' -57 NC_006146.1 + 124085 0.67 0.866169
Target:  5'- aUGCC--CACCgUGCUGGAGAacccAGAggCCu -3'
miRNA:   3'- -ACGGcaGUGGgACGGCCUCU----UCUa-GG- -5'
29023 5' -57 NC_006146.1 + 120787 0.67 0.863953
Target:  5'- gGCUcuUUACCCUGCucgagcuccgcaacCGGAGucAGAUCCa -3'
miRNA:   3'- aCGGc-AGUGGGACG--------------GCCUCu-UCUAGG- -5'
29023 5' -57 NC_006146.1 + 169170 0.67 0.858714
Target:  5'- gGCCGgCGCCUgcaggggggGCCGGcGggGcGUCCc -3'
miRNA:   3'- aCGGCaGUGGGa--------CGGCCuCuuC-UAGG- -5'
29023 5' -57 NC_006146.1 + 167306 0.67 0.858714
Target:  5'- gGCCGgCGCCUgcaggggggGCCGGcGggGcGUCCc -3'
miRNA:   3'- aCGGCaGUGGGa--------CGGCCuCuuC-UAGG- -5'
29023 5' -57 NC_006146.1 + 168238 0.67 0.858714
Target:  5'- gGCCGgCGCCUgcaggggggGCCGGcGggGcGUCCc -3'
miRNA:   3'- aCGGCaGUGGGa--------CGGCCuCuuC-UAGG- -5'
29023 5' -57 NC_006146.1 + 134610 0.67 0.858714
Target:  5'- gGCCaGcCGCCUUGCUGGuGA--AUCCa -3'
miRNA:   3'- aCGG-CaGUGGGACGGCCuCUucUAGG- -5'
29023 5' -57 NC_006146.1 + 156635 0.67 0.854146
Target:  5'- cGCgGUCAUUCUGUCgccucaaacggggaaGGAGGAGGgcgUCCa -3'
miRNA:   3'- aCGgCAGUGGGACGG---------------CCUCUUCU---AGG- -5'
29023 5' -57 NC_006146.1 + 161756 0.67 0.854146
Target:  5'- cGCCGUCcccgaaagaggcaacGCCCcGUgGGAGAccGGcUCCa -3'
miRNA:   3'- aCGGCAG---------------UGGGaCGgCCUCU--UCuAGG- -5'
29023 5' -57 NC_006146.1 + 129202 0.67 0.851062
Target:  5'- cGCCG-CACCCcccGCCGGuGAgcgcugaaAGAgCCa -3'
miRNA:   3'- aCGGCaGUGGGa--CGGCCuCU--------UCUaGG- -5'
29023 5' -57 NC_006146.1 + 15006 0.67 0.851062
Target:  5'- -cCCGUCuCUCUGCCcuguuugccagGGAGggGcgCCu -3'
miRNA:   3'- acGGCAGuGGGACGG-----------CCUCuuCuaGG- -5'
29023 5' -57 NC_006146.1 + 137019 0.67 0.843218
Target:  5'- gGCCGggCACaCC--CCGGGGAGGAggCCg -3'
miRNA:   3'- aCGGCa-GUG-GGacGGCCUCUUCUa-GG- -5'
29023 5' -57 NC_006146.1 + 101193 0.67 0.835189
Target:  5'- cGCUG-CGCCCc-UCGGAgcuGAAGAUCCa -3'
miRNA:   3'- aCGGCaGUGGGacGGCCU---CUUCUAGG- -5'
29023 5' -57 NC_006146.1 + 117711 0.67 0.835189
Target:  5'- cGCCGcCcCCCaagGCCGGGGccGAggCCg -3'
miRNA:   3'- aCGGCaGuGGGa--CGGCCUCuuCUa-GG- -5'
29023 5' -57 NC_006146.1 + 45383 0.68 0.826983
Target:  5'- cGCCuGUU-CCCUGUuucUGGAGggGGcUCCg -3'
miRNA:   3'- aCGG-CAGuGGGACG---GCCUCuuCU-AGG- -5'
29023 5' -57 NC_006146.1 + 54876 0.68 0.826983
Target:  5'- gGCCGUggagGCCUuaaccgGCCGGAGGAGcUCUu -3'
miRNA:   3'- aCGGCAg---UGGGa-----CGGCCUCUUCuAGG- -5'
29023 5' -57 NC_006146.1 + 76881 0.68 0.826983
Target:  5'- gGCCGUgC-CCCUGCCGGGccgcacguGGGAgCCa -3'
miRNA:   3'- aCGGCA-GuGGGACGGCCUc-------UUCUaGG- -5'
29023 5' -57 NC_006146.1 + 97639 0.68 0.826983
Target:  5'- gUGUUuucCACUUUGCUGGuGAAGAUCCu -3'
miRNA:   3'- -ACGGca-GUGGGACGGCCuCUUCUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.