miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29023 5' -57 NC_006146.1 + 3738 0.68 0.810064
Target:  5'- gGCCGcgUgGCCCUucaGcCCGGGGuGGGUCCc -3'
miRNA:   3'- aCGGC--AgUGGGA---C-GGCCUCuUCUAGG- -5'
29023 5' -57 NC_006146.1 + 10969 0.68 0.789842
Target:  5'- cUGCCacaGUCACCuaaagcaggcggcgCUGCCGGugacGggGGUCUu -3'
miRNA:   3'- -ACGG---CAGUGG--------------GACGGCCu---CuuCUAGG- -5'
29023 5' -57 NC_006146.1 + 11806 0.68 0.801368
Target:  5'- gGCUGgggACCCUGCaggaGGGGAAGGUg- -3'
miRNA:   3'- aCGGCag-UGGGACGg---CCUCUUCUAgg -5'
29023 5' -57 NC_006146.1 + 14314 0.66 0.893907
Target:  5'- aGCUGgCGCaCCUGCUGGAGAAc---- -3'
miRNA:   3'- aCGGCaGUG-GGACGGCCUCUUcuagg -5'
29023 5' -57 NC_006146.1 + 14345 0.78 0.295287
Target:  5'- gGCCGUUgcgGCCCUGCUGGuGGggucGGGUCCc -3'
miRNA:   3'- aCGGCAG---UGGGACGGCCuCU----UCUAGG- -5'
29023 5' -57 NC_006146.1 + 14812 0.68 0.818605
Target:  5'- gGCCG--GCCggGCCGGAGGAGggCa -3'
miRNA:   3'- aCGGCagUGGgaCGGCCUCUUCuaGg -5'
29023 5' -57 NC_006146.1 + 15006 0.67 0.851062
Target:  5'- -cCCGUCuCUCUGCCcuguuugccagGGAGggGcgCCu -3'
miRNA:   3'- acGGCAGuGGGACGG-----------CCUCuuCuaGG- -5'
29023 5' -57 NC_006146.1 + 18369 0.68 0.818605
Target:  5'- gGCaUGcUCACCCUgguccuggugGCCGGGGugguGAUCCu -3'
miRNA:   3'- aCG-GC-AGUGGGA----------CGGCCUCuu--CUAGG- -5'
29023 5' -57 NC_006146.1 + 23413 0.69 0.755835
Target:  5'- cGCUGga--CCUGCCGGAGggGcaGUaCCa -3'
miRNA:   3'- aCGGCagugGGACGGCCUCuuC--UA-GG- -5'
29023 5' -57 NC_006146.1 + 24278 0.68 0.818605
Target:  5'- gGCCucGUgACCCUgGCCGGGGGcuGGAcgcuguuuccccUCCa -3'
miRNA:   3'- aCGG--CAgUGGGA-CGGCCUCU--UCU------------AGG- -5'
29023 5' -57 NC_006146.1 + 28027 0.68 0.801368
Target:  5'- aGaCCGUCcgACCCaGCCGGAGGgcAGGUg- -3'
miRNA:   3'- aC-GGCAG--UGGGaCGGCCUCU--UCUAgg -5'
29023 5' -57 NC_006146.1 + 28219 0.68 0.801368
Target:  5'- aGaCCGUCcgACCCaGCCGGAGGgcAGGUg- -3'
miRNA:   3'- aC-GGCAG--UGGGaCGGCCUCU--UCUAgg -5'
29023 5' -57 NC_006146.1 + 32127 0.66 0.887294
Target:  5'- gUGCCacGUCACCCcggggUGCUGGgguGGggGAUg- -3'
miRNA:   3'- -ACGG--CAGUGGG-----ACGGCC---UCuuCUAgg -5'
29023 5' -57 NC_006146.1 + 33192 0.69 0.746378
Target:  5'- gGCCcgggCACCCccggggggagGCCGGAGggGGagCCg -3'
miRNA:   3'- aCGGca--GUGGGa---------CGGCCUCuuCUa-GG- -5'
29023 5' -57 NC_006146.1 + 40305 0.68 0.783539
Target:  5'- gGCCGggcagGCCaaaguagGCCGGAGGAGGguagCCg -3'
miRNA:   3'- aCGGCag---UGGga-----CGGCCUCUUCUa---GG- -5'
29023 5' -57 NC_006146.1 + 42116 0.66 0.880463
Target:  5'- gGCCGaUCacgcuucgGCCCUGCUGGccacacuccAGAAGAaggCCu -3'
miRNA:   3'- aCGGC-AG--------UGGGACGGCC---------UCUUCUa--GG- -5'
29023 5' -57 NC_006146.1 + 42257 0.72 0.607743
Target:  5'- cGCCGUC-CCCgaaUGCgGGAGGAGGa-- -3'
miRNA:   3'- aCGGCAGuGGG---ACGgCCUCUUCUagg -5'
29023 5' -57 NC_006146.1 + 42310 0.66 0.898405
Target:  5'- aGCCGgagUGCCCUGCgaGGuugcugacuggcccGGGAGGUCa -3'
miRNA:   3'- aCGGCa--GUGGGACGg-CC--------------UCUUCUAGg -5'
29023 5' -57 NC_006146.1 + 43925 0.66 0.906467
Target:  5'- cG-CGUCGCCCggcaGUCGGGcGGGGUCUa -3'
miRNA:   3'- aCgGCAGUGGGa---CGGCCUcUUCUAGG- -5'
29023 5' -57 NC_006146.1 + 45293 0.69 0.765186
Target:  5'- aUGCCc-CACCCUcgguggaaaGCCGGAGAacAGcUCCu -3'
miRNA:   3'- -ACGGcaGUGGGA---------CGGCCUCU--UCuAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.