miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29023 5' -57 NC_006146.1 + 60688 1.11 0.001946
Target:  5'- cUGCCGUCACCCUGCCGGAGAAGAUCCu -3'
miRNA:   3'- -ACGGCAGUGGGACGGCCUCUUCUAGG- -5'
29023 5' -57 NC_006146.1 + 169110 0.68 0.792523
Target:  5'- gGCCaGUC-CCUggaUGUCGGGGAGGGcCCg -3'
miRNA:   3'- aCGG-CAGuGGG---ACGGCCUCUUCUaGG- -5'
29023 5' -57 NC_006146.1 + 3738 0.68 0.810064
Target:  5'- gGCCGcgUgGCCCUucaGcCCGGGGuGGGUCCc -3'
miRNA:   3'- aCGGC--AgUGGGA---C-GGCCUCuUCUAGG- -5'
29023 5' -57 NC_006146.1 + 68879 0.66 0.906467
Target:  5'- aGCC-UgGCCCUGauggagaUGGAGAAGGUggCCa -3'
miRNA:   3'- aCGGcAgUGGGACg------GCCUCUUCUA--GG- -5'
29023 5' -57 NC_006146.1 + 97820 0.72 0.561901
Target:  5'- cUGCUGUcCACCCUGgugaaguaccacgacCUGGAGGAGGgggCCg -3'
miRNA:   3'- -ACGGCA-GUGGGAC---------------GGCCUCUUCUa--GG- -5'
29023 5' -57 NC_006146.1 + 42257 0.72 0.607743
Target:  5'- cGCCGUC-CCCgaaUGCgGGAGGAGGa-- -3'
miRNA:   3'- aCGGCAGuGGG---ACGgCCUCUUCUagg -5'
29023 5' -57 NC_006146.1 + 145728 0.7 0.727183
Target:  5'- aGCUugauGUCGCUCUgGCCGGGcAGGAUCUg -3'
miRNA:   3'- aCGG----CAGUGGGA-CGGCCUcUUCUAGG- -5'
29023 5' -57 NC_006146.1 + 146865 0.69 0.736824
Target:  5'- gGCCGcgUCACCCcGCCaGGGGGAcGAcgCCu -3'
miRNA:   3'- aCGGC--AGUGGGaCGG-CCUCUU-CUa-GG- -5'
29023 5' -57 NC_006146.1 + 150494 0.69 0.765186
Target:  5'- aGCCGU--CCCUGUCGGAGgcGGa-- -3'
miRNA:   3'- aCGGCAguGGGACGGCCUCuuCUagg -5'
29023 5' -57 NC_006146.1 + 168178 0.68 0.792523
Target:  5'- gGCCaGUC-CCUggaUGUCGGGGAGGGcCCg -3'
miRNA:   3'- aCGG-CAGuGGG---ACGGCCUCUUCUaGG- -5'
29023 5' -57 NC_006146.1 + 87805 0.68 0.783539
Target:  5'- gGCCGcuccUCACCCU-CUGGAGAGuGUCg -3'
miRNA:   3'- aCGGC----AGUGGGAcGGCCUCUUcUAGg -5'
29023 5' -57 NC_006146.1 + 45293 0.69 0.765186
Target:  5'- aUGCCc-CACCCUcgguggaaaGCCGGAGAacAGcUCCu -3'
miRNA:   3'- -ACGGcaGUGGGA---------CGGCCUCU--UCuAGG- -5'
29023 5' -57 NC_006146.1 + 52851 0.75 0.444639
Target:  5'- cGCCGcCGCCCccGcCCGGGGGcuccAGGUCCg -3'
miRNA:   3'- aCGGCaGUGGGa-C-GGCCUCU----UCUAGG- -5'
29023 5' -57 NC_006146.1 + 10969 0.68 0.789842
Target:  5'- cUGCCacaGUCACCuaaagcaggcggcgCUGCCGGugacGggGGUCUu -3'
miRNA:   3'- -ACGG---CAGUGG--------------GACGGCCu---CuuCUAGG- -5'
29023 5' -57 NC_006146.1 + 128538 0.74 0.462685
Target:  5'- cGCC--CACCCUGgCGGcgcGGGAGAUCCu -3'
miRNA:   3'- aCGGcaGUGGGACgGCC---UCUUCUAGG- -5'
29023 5' -57 NC_006146.1 + 59107 0.69 0.755835
Target:  5'- -uCCGUCACCaUGCCaGGGGAGGGagCu -3'
miRNA:   3'- acGGCAGUGGgACGG-CCUCUUCUagG- -5'
29023 5' -57 NC_006146.1 + 167246 0.68 0.792523
Target:  5'- gGCCaGUC-CCUggaUGUCGGGGAGGGcCCg -3'
miRNA:   3'- aCGG-CAGuGGG---ACGGCCUCUUCUaGG- -5'
29023 5' -57 NC_006146.1 + 170042 0.68 0.792523
Target:  5'- gGCCaGUC-CCUggaUGUCGGGGAGGGcCCg -3'
miRNA:   3'- aCGG-CAGuGGG---ACGGCCUCUUCUaGG- -5'
29023 5' -57 NC_006146.1 + 137876 0.74 0.47185
Target:  5'- gGCCc-CGCCCcggGCCGGcAGggGGUCCc -3'
miRNA:   3'- aCGGcaGUGGGa--CGGCC-UCuuCUAGG- -5'
29023 5' -57 NC_006146.1 + 47914 0.7 0.707671
Target:  5'- aGaaGUCcCCCgugGCCuGGAGGAGAUCg -3'
miRNA:   3'- aCggCAGuGGGa--CGG-CCUCUUCUAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.