miRNA display CGI


Results 41 - 60 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29024 3' -57.6 NC_006146.1 + 125480 0.67 0.820678
Target:  5'- -aCUUCAAcccGGCCGGGGCCucgcgCUGGCCc- -3'
miRNA:   3'- gcGAAGUU---CUGGUUCCGG-----GACCGGca -5'
29024 3' -57.6 NC_006146.1 + 125375 0.67 0.785503
Target:  5'- aGCccaagGAGGCCcAGGCCCccaccgUGGCCGUc -3'
miRNA:   3'- gCGaag--UUCUGGuUCCGGG------ACCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 124260 0.68 0.751988
Target:  5'- uGC-UCAGGGaguacgucucggcccCCAAGGCCCugauggaagaccUGGCCGa -3'
miRNA:   3'- gCGaAGUUCU---------------GGUUCCGGG------------ACCGGCa -5'
29024 3' -57.6 NC_006146.1 + 124143 0.67 0.785503
Target:  5'- cCGCccggggUCGGGAggCGAGGaCCCUGGCCa- -3'
miRNA:   3'- -GCGa-----AGUUCUg-GUUCC-GGGACCGGca -5'
29024 3' -57.6 NC_006146.1 + 123496 0.7 0.618757
Target:  5'- aGCU--GAGGCU--GGCCCUGGCCa- -3'
miRNA:   3'- gCGAagUUCUGGuuCCGGGACCGGca -5'
29024 3' -57.6 NC_006146.1 + 123118 0.67 0.812116
Target:  5'- gCGCUagaCGGGGCUuucagacGGCCCUggaGGCCGUa -3'
miRNA:   3'- -GCGAa--GUUCUGGuu-----CCGGGA---CCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 123022 0.69 0.679354
Target:  5'- uGCUgacCGAGGCCGAggcGGCCCaGGuCCGg -3'
miRNA:   3'- gCGAa--GUUCUGGUU---CCGGGaCC-GGCa -5'
29024 3' -57.6 NC_006146.1 + 122540 0.68 0.757677
Target:  5'- uCGCggaacUCGAGGCC--GGCCCgcUGGCCa- -3'
miRNA:   3'- -GCGa----AGUUCUGGuuCCGGG--ACCGGca -5'
29024 3' -57.6 NC_006146.1 + 121340 0.73 0.46254
Target:  5'- ---aUCGAGGCCAugcuGGgCCUGGCCGg -3'
miRNA:   3'- gcgaAGUUCUGGUu---CCgGGACCGGCa -5'
29024 3' -57.6 NC_006146.1 + 117713 0.79 0.226949
Target:  5'- cCGCccccCAAGGCCGGGGCCgaGGCCGa -3'
miRNA:   3'- -GCGaa--GUUCUGGUUCCGGgaCCGGCa -5'
29024 3' -57.6 NC_006146.1 + 117114 0.69 0.719099
Target:  5'- aCGCcgCGcGGGCCGAGGCCCUcGuCCGg -3'
miRNA:   3'- -GCGaaGU-UCUGGUUCCGGGAcC-GGCa -5'
29024 3' -57.6 NC_006146.1 + 115374 0.7 0.628876
Target:  5'- gGCggCGGaGCUgGAGGCCCUGGCCGc -3'
miRNA:   3'- gCGaaGUUcUGG-UUCCGGGACCGGCa -5'
29024 3' -57.6 NC_006146.1 + 114973 0.66 0.853177
Target:  5'- aCGCagCAgcccacggccgcGGACauCAAGGCCaUGGCCGUg -3'
miRNA:   3'- -GCGaaGU------------UCUG--GUUCCGGgACCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 114702 0.77 0.301008
Target:  5'- gGCUcguccgCGAGACCcGGGCCCUGGCgGc -3'
miRNA:   3'- gCGAa-----GUUCUGGuUCCGGGACCGgCa -5'
29024 3' -57.6 NC_006146.1 + 110709 0.66 0.856261
Target:  5'- uGCUguuuguggaCGAGGCCAacuuuaucaagaaggAGGCCCUG-CCGg -3'
miRNA:   3'- gCGAa--------GUUCUGGU---------------UCCGGGACcGGCa -5'
29024 3' -57.6 NC_006146.1 + 110102 0.66 0.860828
Target:  5'- aCGg-UCcGGACC-AGGCCCUGGaCCu- -3'
miRNA:   3'- -GCgaAGuUCUGGuUCCGGGACC-GGca -5'
29024 3' -57.6 NC_006146.1 + 110005 0.66 0.868278
Target:  5'- aGCUcCugGAuCCAcuGGGCCCcaGGCCGg -3'
miRNA:   3'- gCGAaGuuCU-GGU--UCCGGGa-CCGGCa -5'
29024 3' -57.6 NC_006146.1 + 109276 0.71 0.612689
Target:  5'- uGCUUCAggucguagcugggagGGAUCucGGCCCcGGCCGc -3'
miRNA:   3'- gCGAAGU---------------UCUGGuuCCGGGaCCGGCa -5'
29024 3' -57.6 NC_006146.1 + 108958 0.69 0.719099
Target:  5'- uGCaccgUCccguGGACCAGGGCCCUGgaGCCc- -3'
miRNA:   3'- gCGa---AGu---UCUGGUUCCGGGAC--CGGca -5'
29024 3' -57.6 NC_006146.1 + 99308 0.66 0.860072
Target:  5'- cCGCcuggUCAGGGCCAgaccugcugcggaAGccGCUCUGGCUGUc -3'
miRNA:   3'- -GCGa---AGUUCUGGU-------------UC--CGGGACCGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.