miRNA display CGI


Results 41 - 60 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29024 3' -57.6 NC_006146.1 + 83710 0.66 0.860828
Target:  5'- uGCUgCAcaGCCuguAGGaCCCUGGCCa- -3'
miRNA:   3'- gCGAaGUucUGGu--UCC-GGGACCGGca -5'
29024 3' -57.6 NC_006146.1 + 136759 0.66 0.860828
Target:  5'- uCGC--CGGGGCUccggGAGGCCC-GGCCGc -3'
miRNA:   3'- -GCGaaGUUCUGG----UUCCGGGaCCGGCa -5'
29024 3' -57.6 NC_006146.1 + 24257 0.66 0.863833
Target:  5'- uGUUUUcuGACCAuGGacccaggccucgugaCCCUGGCCGg -3'
miRNA:   3'- gCGAAGuuCUGGUuCC---------------GGGACCGGCa -5'
29024 3' -57.6 NC_006146.1 + 14837 0.66 0.868278
Target:  5'- gGUcUCGGGcCCGGGGCCgCgggaGGCCGa -3'
miRNA:   3'- gCGaAGUUCuGGUUCCGG-Ga---CCGGCa -5'
29024 3' -57.6 NC_006146.1 + 20226 0.66 0.868278
Target:  5'- uGCgugCAGGAUUc-GGCCCUGGUCa- -3'
miRNA:   3'- gCGaa-GUUCUGGuuCCGGGACCGGca -5'
29024 3' -57.6 NC_006146.1 + 40577 0.66 0.845329
Target:  5'- aCGCUgauGAGGuCCu-GGCCCUGGgCGg -3'
miRNA:   3'- -GCGAag-UUCU-GGuuCCGGGACCgGCa -5'
29024 3' -57.6 NC_006146.1 + 15699 0.66 0.837292
Target:  5'- -cCUUCAuca-CGGGGCCaCUGGCCGa -3'
miRNA:   3'- gcGAAGUucugGUUCCGG-GACCGGCa -5'
29024 3' -57.6 NC_006146.1 + 138751 0.67 0.803394
Target:  5'- aGCUgagCGGccuGCCAcGGCCCUGGCUa- -3'
miRNA:   3'- gCGAa--GUUc--UGGUuCCGGGACCGGca -5'
29024 3' -57.6 NC_006146.1 + 6426 0.67 0.812116
Target:  5'- gGCc-CAGGGCCAuguGGGCCCUGGgguCCa- -3'
miRNA:   3'- gCGaaGUUCUGGU---UCCGGGACC---GGca -5'
29024 3' -57.6 NC_006146.1 + 123118 0.67 0.812116
Target:  5'- gCGCUagaCGGGGCUuucagacGGCCCUggaGGCCGUa -3'
miRNA:   3'- -GCGAa--GUUCUGGuu-----CCGGGA---CCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 61598 0.67 0.820678
Target:  5'- gGCUgCAGcGGCCGcGGCCggGGCCGa -3'
miRNA:   3'- gCGAaGUU-CUGGUuCCGGgaCCGGCa -5'
29024 3' -57.6 NC_006146.1 + 125480 0.67 0.820678
Target:  5'- -aCUUCAAcccGGCCGGGGCCucgcgCUGGCCc- -3'
miRNA:   3'- gcGAAGUU---CUGGUUCCGG-----GACCGGca -5'
29024 3' -57.6 NC_006146.1 + 141655 0.67 0.820678
Target:  5'- aCGCUggcacacCGGGccGCCGGGGuCCCUccGGCCGg -3'
miRNA:   3'- -GCGAa------GUUC--UGGUUCC-GGGA--CCGGCa -5'
29024 3' -57.6 NC_006146.1 + 144732 0.67 0.820678
Target:  5'- aCGCUggcacacCGGGccGCCGGGGuCCCUccGGCCGg -3'
miRNA:   3'- -GCGAa------GUUC--UGGUUCC-GGGA--CCGGCa -5'
29024 3' -57.6 NC_006146.1 + 147810 0.67 0.820678
Target:  5'- aCGCUggcacacCGGGccGCCGGGGuCCCUccGGCCGg -3'
miRNA:   3'- -GCGAa------GUUC--UGGUUCC-GGGA--CCGGCa -5'
29024 3' -57.6 NC_006146.1 + 150888 0.67 0.820678
Target:  5'- aCGCUggcacacCGGGccGCCGGGGuCCCUccGGCCGg -3'
miRNA:   3'- -GCGAa------GUUC--UGGUUCC-GGGA--CCGGCa -5'
29024 3' -57.6 NC_006146.1 + 153966 0.67 0.820678
Target:  5'- aCGCUggcacacCGGGccGCCGGGGuCCCUccGGCCGg -3'
miRNA:   3'- -GCGAa------GUUC--UGGUUCC-GGGA--CCGGCa -5'
29024 3' -57.6 NC_006146.1 + 157044 0.67 0.820678
Target:  5'- aCGCUggcacacCGGGccGCCGGGGuCCCUccGGCCGg -3'
miRNA:   3'- -GCGAa------GUUC--UGGUUCC-GGGA--CCGGCa -5'
29024 3' -57.6 NC_006146.1 + 49746 0.67 0.829073
Target:  5'- uCGUUUCAGGGgCGcgcGGCCCaGGCCc- -3'
miRNA:   3'- -GCGAAGUUCUgGUu--CCGGGaCCGGca -5'
29024 3' -57.6 NC_006146.1 + 125941 0.67 0.829073
Target:  5'- cCGCggUCGAGucccCCGGGGCcuccccgcgccCCUGGCCa- -3'
miRNA:   3'- -GCGa-AGUUCu---GGUUCCG-----------GGACCGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.