miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29024 5' -52.6 NC_006146.1 + 149841 0.66 0.984946
Target:  5'- -gGCGGCCAggGCCUcGGCgaagcgcagCGUCUCGc -3'
miRNA:   3'- gaUGCUGGUa-CGGGuCUGa--------GUAGAGU- -5'
29024 5' -52.6 NC_006146.1 + 75772 0.66 0.984946
Target:  5'- -gGCgGACCAaGCCCAGgggGCUCuacucgggcGUCUCGg -3'
miRNA:   3'- gaUG-CUGGUaCGGGUC---UGAG---------UAGAGU- -5'
29024 5' -52.6 NC_006146.1 + 116138 0.66 0.981024
Target:  5'- -gGCGGCCcUGCgCuGGCUgGUCUCc -3'
miRNA:   3'- gaUGCUGGuACGgGuCUGAgUAGAGu -5'
29024 5' -52.6 NC_006146.1 + 95711 0.66 0.981024
Target:  5'- cCUACGuCCAgGgCCAGAC-CAUCUa- -3'
miRNA:   3'- -GAUGCuGGUaCgGGUCUGaGUAGAgu -5'
29024 5' -52.6 NC_006146.1 + 53164 0.66 0.978798
Target:  5'- aCUGCGGCgGUGgCCggaAGGCUCGgcCUCGg -3'
miRNA:   3'- -GAUGCUGgUACgGG---UCUGAGUa-GAGU- -5'
29024 5' -52.6 NC_006146.1 + 47655 0.66 0.976384
Target:  5'- -cGCGGCCcgGCCCAGcGCggcggCcaggGUCUCGu -3'
miRNA:   3'- gaUGCUGGuaCGGGUC-UGa----G----UAGAGU- -5'
29024 5' -52.6 NC_006146.1 + 100381 0.66 0.976384
Target:  5'- -gGCaGCCAUGUCCuccacGCUCAUUUCAg -3'
miRNA:   3'- gaUGcUGGUACGGGuc---UGAGUAGAGU- -5'
29024 5' -52.6 NC_006146.1 + 41880 0.67 0.973775
Target:  5'- gCUGCG-CCGUGCCCcGGACcugagucgCGUCUg- -3'
miRNA:   3'- -GAUGCuGGUACGGG-UCUGa-------GUAGAgu -5'
29024 5' -52.6 NC_006146.1 + 101594 0.67 0.970962
Target:  5'- -aACGACgAgGCCCAGAacgaggucCUCGUCUUu -3'
miRNA:   3'- gaUGCUGgUaCGGGUCU--------GAGUAGAGu -5'
29024 5' -52.6 NC_006146.1 + 121425 0.67 0.969779
Target:  5'- -cAUGACCAacaucaggGCCCcgaucaucucgcuGGCUCGUCUCAu -3'
miRNA:   3'- gaUGCUGGUa-------CGGGu------------CUGAGUAGAGU- -5'
29024 5' -52.6 NC_006146.1 + 25777 0.67 0.96794
Target:  5'- --cCGGCCAgagccugGCCCAGGCcuucuUCAUCUa- -3'
miRNA:   3'- gauGCUGGUa------CGGGUCUG-----AGUAGAgu -5'
29024 5' -52.6 NC_006146.1 + 116663 0.67 0.967939
Target:  5'- -gGCGGCCAUcucGUCCAGAUUUcccacguUCUCAa -3'
miRNA:   3'- gaUGCUGGUA---CGGGUCUGAGu------AGAGU- -5'
29024 5' -52.6 NC_006146.1 + 115221 0.67 0.9647
Target:  5'- -gGCGGCCGUGCCCGuGCUgGccUUCAa -3'
miRNA:   3'- gaUGCUGGUACGGGUcUGAgUa-GAGU- -5'
29024 5' -52.6 NC_006146.1 + 57994 0.68 0.953624
Target:  5'- aUAgGACgA-GCCCAGACUUuggCUCAa -3'
miRNA:   3'- gAUgCUGgUaCGGGUCUGAGua-GAGU- -5'
29024 5' -52.6 NC_006146.1 + 5411 0.68 0.953624
Target:  5'- gCUGCGuCC-UGCCCugcuGGAUUCAgggCUCAc -3'
miRNA:   3'- -GAUGCuGGuACGGG----UCUGAGUa--GAGU- -5'
29024 5' -52.6 NC_006146.1 + 135648 0.69 0.935523
Target:  5'- --cCGGCCGUGCUCuGACUCAuaUUUCc -3'
miRNA:   3'- gauGCUGGUACGGGuCUGAGU--AGAGu -5'
29024 5' -52.6 NC_006146.1 + 45590 0.69 0.935523
Target:  5'- -gGCGGCC-UGCCUcgcgaAGACggaCAUCUCGg -3'
miRNA:   3'- gaUGCUGGuACGGG-----UCUGa--GUAGAGU- -5'
29024 5' -52.6 NC_006146.1 + 57401 0.69 0.924994
Target:  5'- -cGCGACCGUGCCCGGcCgacgCAcgcCUCu -3'
miRNA:   3'- gaUGCUGGUACGGGUCuGa---GUa--GAGu -5'
29024 5' -52.6 NC_006146.1 + 160935 0.69 0.921641
Target:  5'- cCUGCGugagguaaguaggucGCCAUGgCCAGGCUUuucgCUCAg -3'
miRNA:   3'- -GAUGC---------------UGGUACgGGUCUGAGua--GAGU- -5'
29024 5' -52.6 NC_006146.1 + 49864 0.7 0.900961
Target:  5'- uUACGGCCcaguAUGUCCAGGCggGUCUUg -3'
miRNA:   3'- gAUGCUGG----UACGGGUCUGagUAGAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.