miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29025 3' -59 NC_006146.1 + 61476 1.09 0.001679
Target:  5'- cGUGGCCGAGUGGCAGGAUCACCAGGGc -3'
miRNA:   3'- -CACCGGCUCACCGUCCUAGUGGUCCC- -5'
29025 3' -59 NC_006146.1 + 150667 0.8 0.154325
Target:  5'- gGUGGCCGGGgaggGGUGGGGagUgGCCAGGGg -3'
miRNA:   3'- -CACCGGCUCa---CCGUCCU--AgUGGUCCC- -5'
29025 3' -59 NC_006146.1 + 156822 0.8 0.162176
Target:  5'- gGUGGCCGGGgaggGGUGGGGagUgGCCAGGGa -3'
miRNA:   3'- -CACCGGCUCa---CCGUCCU--AgUGGUCCC- -5'
29025 3' -59 NC_006146.1 + 147589 0.8 0.162176
Target:  5'- gGUGGCCGGGgaggGGUGGGGagUgGCCAGGGa -3'
miRNA:   3'- -CACCGGCUCa---CCGUCCU--AgUGGUCCC- -5'
29025 3' -59 NC_006146.1 + 144511 0.8 0.162176
Target:  5'- gGUGGCCGGGgaggGGUGGGGagUgGCCAGGGa -3'
miRNA:   3'- -CACCGGCUCa---CCGUCCU--AgUGGUCCC- -5'
29025 3' -59 NC_006146.1 + 141433 0.8 0.162176
Target:  5'- gGUGGCCGGGgaggGGUGGGGagUgGCCAGGGa -3'
miRNA:   3'- -CACCGGCUCa---CCGUCCU--AgUGGUCCC- -5'
29025 3' -59 NC_006146.1 + 153744 0.8 0.162176
Target:  5'- gGUGGCCGGGgaggGGUGGGGagUgGCCAGGGa -3'
miRNA:   3'- -CACCGGCUCa---CCGUCCU--AgUGGUCCC- -5'
29025 3' -59 NC_006146.1 + 53623 0.76 0.274594
Target:  5'- gGUGGucuCCGGGUcGGCAGGAUCGCgGGGc -3'
miRNA:   3'- -CACC---GGCUCA-CCGUCCUAGUGgUCCc -5'
29025 3' -59 NC_006146.1 + 115783 0.75 0.321598
Target:  5'- -aGGCCGAGUacGaGCAGG-UgGCCAGGGu -3'
miRNA:   3'- caCCGGCUCA--C-CGUCCuAgUGGUCCC- -5'
29025 3' -59 NC_006146.1 + 47999 0.75 0.336088
Target:  5'- gGUGGCUG-GUGGCGGGAggcUUGgCGGGGg -3'
miRNA:   3'- -CACCGGCuCACCGUCCU---AGUgGUCCC- -5'
29025 3' -59 NC_006146.1 + 137399 0.74 0.351049
Target:  5'- -aGGCCGGGagGGUgcuGGGGUC-CCGGGGa -3'
miRNA:   3'- caCCGGCUCa-CCG---UCCUAGuGGUCCC- -5'
29025 3' -59 NC_006146.1 + 33113 0.74 0.358705
Target:  5'- gGUGGCCGcc-GGCGGGuUCGCCGGGc -3'
miRNA:   3'- -CACCGGCucaCCGUCCuAGUGGUCCc -5'
29025 3' -59 NC_006146.1 + 22227 0.74 0.39048
Target:  5'- -aGGCCcgggGAGUGGaggGGGAUCGCCcGGGu -3'
miRNA:   3'- caCCGG----CUCACCg--UCCUAGUGGuCCC- -5'
29025 3' -59 NC_006146.1 + 28383 0.74 0.39048
Target:  5'- -aGGCCcgggGAGUGGaggGGGAUCGCCcGGGu -3'
miRNA:   3'- caCCGG----CUCACCg--UCCUAGUGGuCCC- -5'
29025 3' -59 NC_006146.1 + 19149 0.74 0.39048
Target:  5'- -aGGCCcgggGAGUGGaggGGGAUCGCCcGGGu -3'
miRNA:   3'- caCCGG----CUCACCg--UCCUAGUGGuCCC- -5'
29025 3' -59 NC_006146.1 + 12993 0.74 0.39048
Target:  5'- -aGGCCcgggGAGUGGaggGGGAUCGCCcGGGu -3'
miRNA:   3'- caCCGG----CUCACCg--UCCUAGUGGuCCC- -5'
29025 3' -59 NC_006146.1 + 25305 0.74 0.39048
Target:  5'- -aGGCCcgggGAGUGGaggGGGAUCGCCcGGGu -3'
miRNA:   3'- caCCGG----CUCACCg--UCCUAGUGGuCCC- -5'
29025 3' -59 NC_006146.1 + 16071 0.74 0.39048
Target:  5'- -aGGCCcgggGAGUGGaggGGGAUCGCCcGGGu -3'
miRNA:   3'- caCCGG----CUCACCg--UCCUAGUGGuCCC- -5'
29025 3' -59 NC_006146.1 + 60450 0.73 0.410407
Target:  5'- aUGGCCGAGUgagcGGCAGGccgCggggagcggugagagGCCGGGGg -3'
miRNA:   3'- cACCGGCUCA----CCGUCCua-G---------------UGGUCCC- -5'
29025 3' -59 NC_006146.1 + 137041 0.72 0.450308
Target:  5'- -aGGCCGGGUGGgggccUGGGGUU-CCGGGGa -3'
miRNA:   3'- caCCGGCUCACC-----GUCCUAGuGGUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.