miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29025 3' -59 NC_006146.1 + 167622 0.66 0.786397
Target:  5'- -gGGCgGAG-GGgGGGGUC-CCGcGGGg -3'
miRNA:   3'- caCCGgCUCaCCgUCCUAGuGGU-CCC- -5'
29025 3' -59 NC_006146.1 + 170417 0.66 0.786397
Target:  5'- -gGGCgGAG-GGgGGGGUC-CCGcGGGg -3'
miRNA:   3'- caCCGgCUCaCCgUCCUAGuGGU-CCC- -5'
29025 3' -59 NC_006146.1 + 168554 0.66 0.786397
Target:  5'- -gGGCgGAG-GGgGGGGUC-CCGcGGGg -3'
miRNA:   3'- caCCGgCUCaCCgUCCUAGuGGU-CCC- -5'
29025 3' -59 NC_006146.1 + 123692 0.66 0.786397
Target:  5'- cGUGGCgGAGgcGGcCAGGGgccuggCGCuCGGGGc -3'
miRNA:   3'- -CACCGgCUCa-CC-GUCCUa-----GUG-GUCCC- -5'
29025 3' -59 NC_006146.1 + 14024 0.66 0.786397
Target:  5'- -aGGCgGAG-GGCAGGGagcaGgCGGGGg -3'
miRNA:   3'- caCCGgCUCaCCGUCCUag--UgGUCCC- -5'
29025 3' -59 NC_006146.1 + 109586 0.67 0.777406
Target:  5'- aUGGUCGuAGcacuUGGaCAGGAcgGCCAGGGc -3'
miRNA:   3'- cACCGGC-UC----ACC-GUCCUagUGGUCCC- -5'
29025 3' -59 NC_006146.1 + 144381 0.67 0.777406
Target:  5'- uGUGGCUgucuugccuGGGUGuGUGGGGUC-CCAGGc -3'
miRNA:   3'- -CACCGG---------CUCAC-CGUCCUAGuGGUCCc -5'
29025 3' -59 NC_006146.1 + 63982 0.67 0.7765
Target:  5'- -cGGCUGAGguucugcUGGCuuccagucccagAGGAUCccgacuauGCCAGGGu -3'
miRNA:   3'- caCCGGCUC-------ACCG------------UCCUAG--------UGGUCCC- -5'
29025 3' -59 NC_006146.1 + 154887 0.67 0.768291
Target:  5'- --cGUCGGGgGGCAGGGccUCGCCcGGGc -3'
miRNA:   3'- cacCGGCUCaCCGUCCU--AGUGGuCCC- -5'
29025 3' -59 NC_006146.1 + 167138 0.67 0.768291
Target:  5'- -cGGCa-AGUGGCAGGu---CUAGGGg -3'
miRNA:   3'- caCCGgcUCACCGUCCuaguGGUCCC- -5'
29025 3' -59 NC_006146.1 + 127486 0.67 0.768291
Target:  5'- aUGGaCGAGgagacGGCGGGGgucgcaGCCGGGGc -3'
miRNA:   3'- cACCgGCUCa----CCGUCCUag----UGGUCCC- -5'
29025 3' -59 NC_006146.1 + 41849 0.67 0.768291
Target:  5'- -gGGCCG--UGGcCAGGggCuACCGGGGc -3'
miRNA:   3'- caCCGGCucACC-GUCCuaG-UGGUCCC- -5'
29025 3' -59 NC_006146.1 + 149824 0.67 0.768291
Target:  5'- -aGGCucCGGGUGGUGuGGGcgGCCAGGGc -3'
miRNA:   3'- caCCG--GCUCACCGU-CCUagUGGUCCC- -5'
29025 3' -59 NC_006146.1 + 170639 0.67 0.762766
Target:  5'- -gGGCucccccucaCGGGUGGCgcgcagaucggcgcgGGGGagGCCAGGGg -3'
miRNA:   3'- caCCG---------GCUCACCG---------------UCCUagUGGUCCC- -5'
29025 3' -59 NC_006146.1 + 41590 0.67 0.749725
Target:  5'- cUGGCCGA--GGCGGaGAggcCCGGGGg -3'
miRNA:   3'- cACCGGCUcaCCGUC-CUaguGGUCCC- -5'
29025 3' -59 NC_006146.1 + 26266 0.67 0.749725
Target:  5'- -gGGCaCGGGUGGCGGaAUUAgCCuGGGu -3'
miRNA:   3'- caCCG-GCUCACCGUCcUAGU-GGuCCC- -5'
29025 3' -59 NC_006146.1 + 13527 0.67 0.740291
Target:  5'- -gGGCCGAggcGUGGaCAGGAaccugCugCAGGc -3'
miRNA:   3'- caCCGGCU---CACC-GUCCUa----GugGUCCc -5'
29025 3' -59 NC_006146.1 + 40005 0.67 0.740291
Target:  5'- aGUGGCCGGuGUGggcguaGCAGGGggccUGCUGGGGg -3'
miRNA:   3'- -CACCGGCU-CAC------CGUCCUa---GUGGUCCC- -5'
29025 3' -59 NC_006146.1 + 49501 0.67 0.730767
Target:  5'- -gGGCgGcGUGGCAucuGGAUCGgcgggugauCCGGGGg -3'
miRNA:   3'- caCCGgCuCACCGU---CCUAGU---------GGUCCC- -5'
29025 3' -59 NC_006146.1 + 44943 0.68 0.721163
Target:  5'- cGUGGCCaGGG-GcGCGGGGagGCCccGGGGg -3'
miRNA:   3'- -CACCGG-CUCaC-CGUCCUagUGG--UCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.