miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29025 3' -59 NC_006146.1 + 1231 0.68 0.69195
Target:  5'- uUGGCCG-GUGGCAGcAUUcuccaaACCuGGGg -3'
miRNA:   3'- cACCGGCuCACCGUCcUAG------UGGuCCC- -5'
29025 3' -59 NC_006146.1 + 4936 0.66 0.786397
Target:  5'- gGUGGCCGugcucuGUGcccCGGGG--ACCAGGGg -3'
miRNA:   3'- -CACCGGCu-----CACc--GUCCUagUGGUCCC- -5'
29025 3' -59 NC_006146.1 + 12869 0.7 0.563131
Target:  5'- -aGGCUGGGUGGCuGGGcagGCCGGGu -3'
miRNA:   3'- caCCGGCUCACCGuCCUag-UGGUCCc -5'
29025 3' -59 NC_006146.1 + 12993 0.74 0.39048
Target:  5'- -aGGCCcgggGAGUGGaggGGGAUCGCCcGGGu -3'
miRNA:   3'- caCCGG----CUCACCg--UCCUAGUGGuCCC- -5'
29025 3' -59 NC_006146.1 + 13527 0.67 0.740291
Target:  5'- -gGGCCGAggcGUGGaCAGGAaccugCugCAGGc -3'
miRNA:   3'- caCCGGCU---CACC-GUCCUa----GugGUCCc -5'
29025 3' -59 NC_006146.1 + 13921 0.69 0.662311
Target:  5'- uUGGaagGAGUGGCGGGugggC-CCGGGGg -3'
miRNA:   3'- cACCgg-CUCACCGUCCua--GuGGUCCC- -5'
29025 3' -59 NC_006146.1 + 14024 0.66 0.786397
Target:  5'- -aGGCgGAG-GGCAGGGagcaGgCGGGGg -3'
miRNA:   3'- caCCGgCUCaCCGUCCUag--UgGUCCC- -5'
29025 3' -59 NC_006146.1 + 14860 0.69 0.652375
Target:  5'- -aGGCCGAGggGGCA-----GCCAGGGa -3'
miRNA:   3'- caCCGGCUCa-CCGUccuagUGGUCCC- -5'
29025 3' -59 NC_006146.1 + 15947 0.66 0.803979
Target:  5'- -aGGCUGGGUGGCuGGGcaggccggucUCGgguCUGGGGg -3'
miRNA:   3'- caCCGGCUCACCGuCCU----------AGU---GGUCCC- -5'
29025 3' -59 NC_006146.1 + 16071 0.74 0.39048
Target:  5'- -aGGCCcgggGAGUGGaggGGGAUCGCCcGGGu -3'
miRNA:   3'- caCCGG----CUCACCg--UCCUAGUGGuCCC- -5'
29025 3' -59 NC_006146.1 + 19024 0.7 0.563131
Target:  5'- -aGGCUGGGUGGCuGGGcagGCCGGGu -3'
miRNA:   3'- caCCGGCUCACCGuCCUag-UGGUCCc -5'
29025 3' -59 NC_006146.1 + 19149 0.74 0.39048
Target:  5'- -aGGCCcgggGAGUGGaggGGGAUCGCCcGGGu -3'
miRNA:   3'- caCCGG----CUCACCg--UCCUAGUGGuCCC- -5'
29025 3' -59 NC_006146.1 + 21399 0.7 0.616532
Target:  5'- -aGGCCuaugcggaccucagaGAG-GGCAGGGUCcCCAuGGGg -3'
miRNA:   3'- caCCGG---------------CUCaCCGUCCUAGuGGU-CCC- -5'
29025 3' -59 NC_006146.1 + 22102 0.7 0.563131
Target:  5'- -aGGCUGGGUGGCuGGGcagGCCGGGu -3'
miRNA:   3'- caCCGGCUCACCGuCCUag-UGGUCCc -5'
29025 3' -59 NC_006146.1 + 22227 0.74 0.39048
Target:  5'- -aGGCCcgggGAGUGGaggGGGAUCGCCcGGGu -3'
miRNA:   3'- caCCGG----CUCACCg--UCCUAGUGGuCCC- -5'
29025 3' -59 NC_006146.1 + 24109 0.66 0.803979
Target:  5'- -gGGUCGAG-GGCGGcuggCACCGGGc -3'
miRNA:   3'- caCCGGCUCaCCGUCcua-GUGGUCCc -5'
29025 3' -59 NC_006146.1 + 25180 0.7 0.563131
Target:  5'- -aGGCUGGGUGGCuGGGcagGCCGGGu -3'
miRNA:   3'- caCCGGCUCACCGuCCUag-UGGUCCc -5'
29025 3' -59 NC_006146.1 + 25305 0.74 0.39048
Target:  5'- -aGGCCcgggGAGUGGaggGGGAUCGCCcGGGu -3'
miRNA:   3'- caCCGG----CUCACCg--UCCUAGUGGuCCC- -5'
29025 3' -59 NC_006146.1 + 26266 0.67 0.749725
Target:  5'- -gGGCaCGGGUGGCGGaAUUAgCCuGGGu -3'
miRNA:   3'- caCCG-GCUCACCGUCcUAGU-GGuCCC- -5'
29025 3' -59 NC_006146.1 + 27331 0.68 0.68112
Target:  5'- cUGGCCcuccaaaaacagcGGGUGGCGcGGcAagGCCGGGGg -3'
miRNA:   3'- cACCGG-------------CUCACCGU-CC-UagUGGUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.