miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29025 3' -59 NC_006146.1 + 61476 1.09 0.001679
Target:  5'- cGUGGCCGAGUGGCAGGAUCACCAGGGc -3'
miRNA:   3'- -CACCGGCUCACCGUCCUAGUGGUCCC- -5'
29025 3' -59 NC_006146.1 + 60129 0.71 0.533975
Target:  5'- -gGGCCGGGggagggaccUGGUGGGGggugugUGCCAGGGg -3'
miRNA:   3'- caCCGGCUC---------ACCGUCCUa-----GUGGUCCC- -5'
29025 3' -59 NC_006146.1 + 19024 0.7 0.563131
Target:  5'- -aGGCUGGGUGGCuGGGcagGCCGGGu -3'
miRNA:   3'- caCCGGCUCACCGuCCUag-UGGUCCc -5'
29025 3' -59 NC_006146.1 + 148049 0.66 0.829227
Target:  5'- -gGGCCcaugaugaugagGAGgaugaugaUGaGCAGGAgCACCAGGGc -3'
miRNA:   3'- caCCGG------------CUC--------AC-CGUCCUaGUGGUCCC- -5'
29025 3' -59 NC_006146.1 + 12993 0.74 0.39048
Target:  5'- -aGGCCcgggGAGUGGaggGGGAUCGCCcGGGu -3'
miRNA:   3'- caCCGG----CUCACCg--UCCUAGUGGuCCC- -5'
29025 3' -59 NC_006146.1 + 16071 0.74 0.39048
Target:  5'- -aGGCCcgggGAGUGGaggGGGAUCGCCcGGGu -3'
miRNA:   3'- caCCGG----CUCACCg--UCCUAGUGGuCCC- -5'
29025 3' -59 NC_006146.1 + 22227 0.74 0.39048
Target:  5'- -aGGCCcgggGAGUGGaggGGGAUCGCCcGGGu -3'
miRNA:   3'- caCCGG----CUCACCg--UCCUAGUGGuCCC- -5'
29025 3' -59 NC_006146.1 + 25305 0.74 0.39048
Target:  5'- -aGGCCcgggGAGUGGaggGGGAUCGCCcGGGu -3'
miRNA:   3'- caCCGG----CUCACCg--UCCUAGUGGuCCC- -5'
29025 3' -59 NC_006146.1 + 46910 0.72 0.477448
Target:  5'- -aGGCCGGGUuGagGGGGUCGCaCGGGGa -3'
miRNA:   3'- caCCGGCUCAcCg-UCCUAGUG-GUCCC- -5'
29025 3' -59 NC_006146.1 + 86605 0.71 0.513887
Target:  5'- aUGGCUGugccuauGGUGGCAGGGaucaUCACCcuguugcuGGGGg -3'
miRNA:   3'- cACCGGC-------UCACCGUCCU----AGUGG--------UCCC- -5'
29025 3' -59 NC_006146.1 + 168337 0.72 0.495983
Target:  5'- -gGGCCGGGgccUGGCGGGGgccaGCgCGGGGu -3'
miRNA:   3'- caCCGGCUC---ACCGUCCUag--UG-GUCCC- -5'
29025 3' -59 NC_006146.1 + 34059 0.72 0.451199
Target:  5'- -cGGCCGGGggucccguggcacggGGCcgGGGGUC-CCGGGGg -3'
miRNA:   3'- caCCGGCUCa--------------CCG--UCCUAGuGGUCCC- -5'
29025 3' -59 NC_006146.1 + 53623 0.76 0.274594
Target:  5'- gGUGGucuCCGGGUcGGCAGGAUCGCgGGGc -3'
miRNA:   3'- -CACC---GGCUCA-CCGUCCUAGUGgUCCc -5'
29025 3' -59 NC_006146.1 + 169269 0.72 0.495983
Target:  5'- -gGGCCGGGgccUGGCGGGGgccaGCgCGGGGu -3'
miRNA:   3'- caCCGGCUC---ACCGUCCUag--UG-GUCCC- -5'
29025 3' -59 NC_006146.1 + 47999 0.75 0.336088
Target:  5'- gGUGGCUG-GUGGCGGGAggcUUGgCGGGGg -3'
miRNA:   3'- -CACCGGCuCACCGUCCU---AGUgGUCCC- -5'
29025 3' -59 NC_006146.1 + 28383 0.74 0.39048
Target:  5'- -aGGCCcgggGAGUGGaggGGGAUCGCCcGGGu -3'
miRNA:   3'- caCCGG----CUCACCg--UCCUAGUGGuCCC- -5'
29025 3' -59 NC_006146.1 + 170200 0.72 0.495983
Target:  5'- -gGGCCGGGgccUGGCGGGGgccaGCgCGGGGu -3'
miRNA:   3'- caCCGGCUC---ACCGUCCUag--UG-GUCCC- -5'
29025 3' -59 NC_006146.1 + 12869 0.7 0.563131
Target:  5'- -aGGCUGGGUGGCuGGGcagGCCGGGu -3'
miRNA:   3'- caCCGGCUCACCGuCCUag-UGGUCCc -5'
29025 3' -59 NC_006146.1 + 33113 0.74 0.358705
Target:  5'- gGUGGCCGcc-GGCGGGuUCGCCGGGc -3'
miRNA:   3'- -CACCGGCucaCCGUCCuAGUGGUCCc -5'
29025 3' -59 NC_006146.1 + 19149 0.74 0.39048
Target:  5'- -aGGCCcgggGAGUGGaggGGGAUCGCCcGGGu -3'
miRNA:   3'- caCCGG----CUCACCg--UCCUAGUGGuCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.