miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29025 5' -56.4 NC_006146.1 + 128531 0.66 0.890118
Target:  5'- cGCCCCUcGCCcaCCCUGgCGgcgCGGGAGa -3'
miRNA:   3'- -CGGGGA-CGGc-GGGACaGUaa-GUCUUU- -5'
29025 5' -56.4 NC_006146.1 + 61308 0.66 0.888071
Target:  5'- gGCCCUgGCCGUCCUGUCcaagugcuacgaccAUgccCAGAc- -3'
miRNA:   3'- -CGGGGaCGGCGGGACAG--------------UAa--GUCUuu -5'
29025 5' -56.4 NC_006146.1 + 125761 0.66 0.87609
Target:  5'- uGCCCUUGCUGCCauucuuCUGUUucaacgCAGggGa -3'
miRNA:   3'- -CGGGGACGGCGG------GACAGuaa---GUCuuU- -5'
29025 5' -56.4 NC_006146.1 + 108986 0.67 0.845439
Target:  5'- aGCCCCUGaUgGCCCgccggGUCuUUgAGAAGg -3'
miRNA:   3'- -CGGGGAC-GgCGGGa----CAGuAAgUCUUU- -5'
29025 5' -56.4 NC_006146.1 + 151930 0.67 0.828913
Target:  5'- cGgCCCUGCCGCCCUcUC---UAGggGc -3'
miRNA:   3'- -CgGGGACGGCGGGAcAGuaaGUCuuU- -5'
29025 5' -56.4 NC_006146.1 + 125363 0.68 0.811664
Target:  5'- uCCCCUGCCugGCCCUGgucaCGUUCu---- -3'
miRNA:   3'- cGGGGACGG--CGGGACa---GUAAGucuuu -5'
29025 5' -56.4 NC_006146.1 + 93081 0.68 0.784577
Target:  5'- cGCCCCccuccGCCGUCCUGUCccaaUAGAu- -3'
miRNA:   3'- -CGGGGa----CGGCGGGACAGuaa-GUCUuu -5'
29025 5' -56.4 NC_006146.1 + 28453 0.69 0.756246
Target:  5'- gGCCCCaaggcgGCCGCCCUcaGUCcccCAGAc- -3'
miRNA:   3'- -CGGGGa-----CGGCGGGA--CAGuaaGUCUuu -5'
29025 5' -56.4 NC_006146.1 + 25375 0.69 0.756246
Target:  5'- gGCCCCaaggcgGCCGCCCUcaGUCcccCAGAc- -3'
miRNA:   3'- -CGGGGa-----CGGCGGGA--CAGuaaGUCUuu -5'
29025 5' -56.4 NC_006146.1 + 22297 0.69 0.756246
Target:  5'- gGCCCCaaggcgGCCGCCCUcaGUCcccCAGAc- -3'
miRNA:   3'- -CGGGGa-----CGGCGGGA--CAGuaaGUCUuu -5'
29025 5' -56.4 NC_006146.1 + 19219 0.69 0.756246
Target:  5'- gGCCCCaaggcgGCCGCCCUcaGUCcccCAGAc- -3'
miRNA:   3'- -CGGGGa-----CGGCGGGA--CAGuaaGUCUuu -5'
29025 5' -56.4 NC_006146.1 + 16141 0.69 0.756246
Target:  5'- gGCCCCaaggcgGCCGCCCUcaGUCcccCAGAc- -3'
miRNA:   3'- -CGGGGa-----CGGCGGGA--CAGuaaGUCUuu -5'
29025 5' -56.4 NC_006146.1 + 13063 0.69 0.756246
Target:  5'- gGCCCCaaggcgGCCGCCCUcaGUCcccCAGAc- -3'
miRNA:   3'- -CGGGGa-----CGGCGGGA--CAGuaaGUCUuu -5'
29025 5' -56.4 NC_006146.1 + 54244 0.69 0.736788
Target:  5'- aGCCUCUggGCgGCCCcgGUCAggCGGGAAa -3'
miRNA:   3'- -CGGGGA--CGgCGGGa-CAGUaaGUCUUU- -5'
29025 5' -56.4 NC_006146.1 + 129077 0.69 0.726917
Target:  5'- aGCCCCcgcgacauCCGgCCUGUCGUgCAGAAAc -3'
miRNA:   3'- -CGGGGac------GGCgGGACAGUAaGUCUUU- -5'
29025 5' -56.4 NC_006146.1 + 110312 0.69 0.720954
Target:  5'- cGUUCaucGCCGCCCUGUCcccgucaaacagcauGUUCAGAAu -3'
miRNA:   3'- -CGGGga-CGGCGGGACAG---------------UAAGUCUUu -5'
29025 5' -56.4 NC_006146.1 + 161326 0.71 0.594365
Target:  5'- aGCCCCUGa--CCCUGUCuGUUCAGGc- -3'
miRNA:   3'- -CGGGGACggcGGGACAG-UAAGUCUuu -5'
29025 5' -56.4 NC_006146.1 + 3159 0.72 0.547681
Target:  5'- gGCCCCUG-CGCCCUGaucgagcaccugcgaUCucugGUUCAGAAAg -3'
miRNA:   3'- -CGGGGACgGCGGGAC---------------AG----UAAGUCUUU- -5'
29025 5' -56.4 NC_006146.1 + 150483 0.74 0.475356
Target:  5'- gGCCCCcugguaGCCGuCCCUGUCGgaggCGGAGGg -3'
miRNA:   3'- -CGGGGa-----CGGC-GGGACAGUaa--GUCUUU- -5'
29025 5' -56.4 NC_006146.1 + 61512 1.07 0.003169
Target:  5'- gGCCCCUGCCGCCCUGUCAUUCAGAAAc -3'
miRNA:   3'- -CGGGGACGGCGGGACAGUAAGUCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.