miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29026 3' -58.1 NC_006146.1 + 54090 0.66 0.86001
Target:  5'- cGCGCUCUug-GaCCCUAaccUGCUCCCc -3'
miRNA:   3'- -CGCGAGAcuaC-GGGAUgu-ACGGGGGc -5'
29026 3' -58.1 NC_006146.1 + 32975 0.66 0.86001
Target:  5'- gGCGCgCUGG-GUCgCgGC-UGCCCCCGg -3'
miRNA:   3'- -CGCGaGACUaCGG-GaUGuACGGGGGC- -5'
29026 3' -58.1 NC_006146.1 + 164966 0.66 0.86001
Target:  5'- aUGgUCUGG-GCCCU-CAuUGCCUCCGu -3'
miRNA:   3'- cGCgAGACUaCGGGAuGU-ACGGGGGC- -5'
29026 3' -58.1 NC_006146.1 + 85931 0.66 0.86001
Target:  5'- gGgGC-CUgGAUGgCCUGCGggacuuUGCCCCCc -3'
miRNA:   3'- -CgCGaGA-CUACgGGAUGU------ACGGGGGc -5'
29026 3' -58.1 NC_006146.1 + 3094 0.66 0.86001
Target:  5'- cCGCUCUGGaGCUCUucuCcgGCCUCUa -3'
miRNA:   3'- cGCGAGACUaCGGGAu--GuaCGGGGGc -5'
29026 3' -58.1 NC_006146.1 + 140641 0.66 0.852397
Target:  5'- gGCGCUCcuUGGUGCCUguggugAUGCUCUCu -3'
miRNA:   3'- -CGCGAG--ACUACGGGaug---UACGGGGGc -5'
29026 3' -58.1 NC_006146.1 + 115312 0.66 0.852397
Target:  5'- cUGCUCUGGgaccagaCCUACG-GCaCCCCGg -3'
miRNA:   3'- cGCGAGACUacg----GGAUGUaCG-GGGGC- -5'
29026 3' -58.1 NC_006146.1 + 167958 0.66 0.844592
Target:  5'- aGCGC-CUGGUGUCUgaugACucccaGCuCCCCGg -3'
miRNA:   3'- -CGCGaGACUACGGGa---UGua---CG-GGGGC- -5'
29026 3' -58.1 NC_006146.1 + 126624 0.66 0.844591
Target:  5'- uGCGUUgUGGUaGCUCUGCA-GCCCUUu -3'
miRNA:   3'- -CGCGAgACUA-CGGGAUGUaCGGGGGc -5'
29026 3' -58.1 NC_006146.1 + 3201 0.66 0.8366
Target:  5'- cGCGCUCgg--GCCCcGgGgaaGCCCCCc -3'
miRNA:   3'- -CGCGAGacuaCGGGaUgUa--CGGGGGc -5'
29026 3' -58.1 NC_006146.1 + 1337 0.66 0.8366
Target:  5'- cGCGCUCgg--GCCCcGgGgaaGCCCCCc -3'
miRNA:   3'- -CGCGAGacuaCGGGaUgUa--CGGGGGc -5'
29026 3' -58.1 NC_006146.1 + 2269 0.66 0.8366
Target:  5'- cGCGCUCgg--GCCCcGgGgaaGCCCCCc -3'
miRNA:   3'- -CGCGAGacuaCGGGaUgUa--CGGGGGc -5'
29026 3' -58.1 NC_006146.1 + 125219 0.66 0.8366
Target:  5'- gGCGCUCaGA-GCCCUucc-GCUCCCu -3'
miRNA:   3'- -CGCGAGaCUaCGGGAuguaCGGGGGc -5'
29026 3' -58.1 NC_006146.1 + 140507 0.66 0.82843
Target:  5'- uGCGCcacCUGGcgGCCCUACAgcaaaccuaGCCCUgGg -3'
miRNA:   3'- -CGCGa--GACUa-CGGGAUGUa--------CGGGGgC- -5'
29026 3' -58.1 NC_006146.1 + 142017 0.66 0.825945
Target:  5'- uGgGCUCUGAaGCCCUggagaggggugaggACuuugGCCUCUGg -3'
miRNA:   3'- -CgCGAGACUaCGGGA--------------UGua--CGGGGGC- -5'
29026 3' -58.1 NC_006146.1 + 145095 0.66 0.825945
Target:  5'- uGgGCUCUGAaGCCCUggagaggggugaggACuuugGCCUCUGg -3'
miRNA:   3'- -CgCGAGACUaCGGGA--------------UGua--CGGGGGC- -5'
29026 3' -58.1 NC_006146.1 + 148173 0.66 0.825945
Target:  5'- uGgGCUCUGAaGCCCUggagaggggugaggACuuugGCCUCUGg -3'
miRNA:   3'- -CgCGAGACUaCGGGA--------------UGua--CGGGGGC- -5'
29026 3' -58.1 NC_006146.1 + 151251 0.66 0.825945
Target:  5'- uGgGCUCUGAaGCCCUggagaggggugaggACuuugGCCUCUGg -3'
miRNA:   3'- -CgCGAGACUaCGGGA--------------UGua--CGGGGGC- -5'
29026 3' -58.1 NC_006146.1 + 157407 0.66 0.825945
Target:  5'- uGgGCUCUGAaGCCCUggagaggggugaggACuuugGCCUCUGg -3'
miRNA:   3'- -CgCGAGACUaCGGGA--------------UGua--CGGGGGC- -5'
29026 3' -58.1 NC_006146.1 + 154329 0.66 0.825945
Target:  5'- uGgGCUCUGAaGCCCUggagaggggugaggACuuugGCCUCUGg -3'
miRNA:   3'- -CgCGAGACUaCGGGA--------------UGua--CGGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.