Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29026 | 3' | -58.1 | NC_006146.1 | + | 61705 | 1.11 | 0.001495 |
Target: 5'- uGCGCUCUGAUGCCCUACAUGCCCCCGg -3' miRNA: 3'- -CGCGAGACUACGGGAUGUACGGGGGC- -5' |
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29026 | 3' | -58.1 | NC_006146.1 | + | 95399 | 0.75 | 0.362435 |
Target: 5'- gGCaGCUCacgcUGGUGCuCUUGCcgGCCCCCGc -3' miRNA: 3'- -CG-CGAG----ACUACG-GGAUGuaCGGGGGC- -5' |
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29026 | 3' | -58.1 | NC_006146.1 | + | 125010 | 0.73 | 0.463611 |
Target: 5'- gGCGCUgaGAaaucucaUGCCCUACGgaaCCCCCa -3' miRNA: 3'- -CGCGAgaCU-------ACGGGAUGUac-GGGGGc -5' |
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29026 | 3' | -58.1 | NC_006146.1 | + | 65202 | 0.72 | 0.492324 |
Target: 5'- gGCGCUCUGGggGCCCUGgGaGCCCg-- -3' miRNA: 3'- -CGCGAGACUa-CGGGAUgUaCGGGggc -5' |
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29026 | 3' | -58.1 | NC_006146.1 | + | 69473 | 0.71 | 0.569756 |
Target: 5'- -gGCUUaaccagGAUGCCCUGCAUGgCCaggCCCGa -3' miRNA: 3'- cgCGAGa-----CUACGGGAUGUAC-GG---GGGC- -5' |
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29026 | 3' | -58.1 | NC_006146.1 | + | 96123 | 0.7 | 0.599642 |
Target: 5'- gGgGUUCUGGUGCacacucuuuCCUGCGUcuugGCCCCCc -3' miRNA: 3'- -CgCGAGACUACG---------GGAUGUA----CGGGGGc -5' |
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29026 | 3' | -58.1 | NC_006146.1 | + | 68704 | 0.7 | 0.609658 |
Target: 5'- aGCGCUUUGAcGCCgUcCGcGUCCCCGa -3' miRNA: 3'- -CGCGAGACUaCGGgAuGUaCGGGGGC- -5' |
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29026 | 3' | -58.1 | NC_006146.1 | + | 65123 | 0.7 | 0.639777 |
Target: 5'- -aGCcCUgGGUGCCCUugGUGCUCuuGg -3' miRNA: 3'- cgCGaGA-CUACGGGAugUACGGGggC- -5' |
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29026 | 3' | -58.1 | NC_006146.1 | + | 55921 | 0.69 | 0.683795 |
Target: 5'- -gGCcUUGAUGUCCgcggccgugggcugcUGCGUGCCCCCc -3' miRNA: 3'- cgCGaGACUACGGG---------------AUGUACGGGGGc -5' |
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29026 | 3' | -58.1 | NC_006146.1 | + | 14186 | 0.69 | 0.689752 |
Target: 5'- uGCcCUCUGA-GCCCccuuUGCCCCCu -3' miRNA: 3'- -CGcGAGACUaCGGGauguACGGGGGc -5' |
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29026 | 3' | -58.1 | NC_006146.1 | + | 23420 | 0.69 | 0.689752 |
Target: 5'- uGCcCUCUGA-GCCCccuuUGCCCCCu -3' miRNA: 3'- -CGcGAGACUaCGGGauguACGGGGGc -5' |
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29026 | 3' | -58.1 | NC_006146.1 | + | 29576 | 0.69 | 0.689752 |
Target: 5'- uGCcCUCUGA-GCCCccuuUGCCCCCu -3' miRNA: 3'- -CGcGAGACUaCGGGauguACGGGGGc -5' |
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29026 | 3' | -58.1 | NC_006146.1 | + | 26498 | 0.69 | 0.689752 |
Target: 5'- uGCcCUCUGA-GCCCccuuUGCCCCCu -3' miRNA: 3'- -CGcGAGACUaCGGGauguACGGGGGc -5' |
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29026 | 3' | -58.1 | NC_006146.1 | + | 17264 | 0.69 | 0.689752 |
Target: 5'- uGCcCUCUGA-GCCCccuuUGCCCCCu -3' miRNA: 3'- -CGcGAGACUaCGGGauguACGGGGGc -5' |
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29026 | 3' | -58.1 | NC_006146.1 | + | 20342 | 0.69 | 0.689752 |
Target: 5'- uGCcCUCUGA-GCCCccuuUGCCCCCu -3' miRNA: 3'- -CGcGAGACUaCGGGauguACGGGGGc -5' |
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29026 | 3' | -58.1 | NC_006146.1 | + | 144985 | 0.69 | 0.693714 |
Target: 5'- gGCGuCUCUGGgucuggacuggaggGCCCUGgGagGCCCCUGu -3' miRNA: 3'- -CGC-GAGACUa-------------CGGGAUgUa-CGGGGGC- -5' |
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29026 | 3' | -58.1 | NC_006146.1 | + | 148063 | 0.69 | 0.693714 |
Target: 5'- gGCGuCUCUGGgucuggacuggaggGCCCUGgGagGCCCCUGu -3' miRNA: 3'- -CGC-GAGACUa-------------CGGGAUgUa-CGGGGGC- -5' |
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29026 | 3' | -58.1 | NC_006146.1 | + | 151141 | 0.69 | 0.693714 |
Target: 5'- gGCGuCUCUGGgucuggacuggaggGCCCUGgGagGCCCCUGu -3' miRNA: 3'- -CGC-GAGACUa-------------CGGGAUgUa-CGGGGGC- -5' |
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29026 | 3' | -58.1 | NC_006146.1 | + | 154219 | 0.69 | 0.693714 |
Target: 5'- gGCGuCUCUGGgucuggacuggaggGCCCUGgGagGCCCCUGu -3' miRNA: 3'- -CGC-GAGACUa-------------CGGGAUgUa-CGGGGGC- -5' |
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29026 | 3' | -58.1 | NC_006146.1 | + | 157297 | 0.69 | 0.693714 |
Target: 5'- gGCGuCUCUGGgucuggacuggaggGCCCUGgGagGCCCCUGu -3' miRNA: 3'- -CGC-GAGACUa-------------CGGGAUgUa-CGGGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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