miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29026 3' -58.1 NC_006146.1 + 117262 0.66 0.820088
Target:  5'- gGCGCUgaCUGA-GCCCcGCGauccUGCCgaCCCGg -3'
miRNA:   3'- -CGCGA--GACUaCGGGaUGU----ACGG--GGGC- -5'
29026 3' -58.1 NC_006146.1 + 5130 0.66 0.819244
Target:  5'- -gGCUCUGAUugaucgcucacccGCCCUGCGagacGCCCUg- -3'
miRNA:   3'- cgCGAGACUA-------------CGGGAUGUa---CGGGGgc -5'
29026 3' -58.1 NC_006146.1 + 85324 0.67 0.811581
Target:  5'- cGgGCggCUGccuccUGCCaccccACGUGCCCCCGa -3'
miRNA:   3'- -CgCGa-GACu----ACGGga---UGUACGGGGGC- -5'
29026 3' -58.1 NC_006146.1 + 153453 0.67 0.81158
Target:  5'- gGUGUUgUGuuguUGCCCUccGCcUGCCUCCGu -3'
miRNA:   3'- -CGCGAgACu---ACGGGA--UGuACGGGGGC- -5'
29026 3' -58.1 NC_006146.1 + 40514 0.67 0.81158
Target:  5'- aUGCUCgGggGCCC-ACGUGUuuUCCCGg -3'
miRNA:   3'- cGCGAGaCuaCGGGaUGUACG--GGGGC- -5'
29026 3' -58.1 NC_006146.1 + 74424 0.67 0.80986
Target:  5'- cUGCUCcaggugggccagGAUGUCCUuguACAUGUCCCUGc -3'
miRNA:   3'- cGCGAGa-----------CUACGGGA---UGUACGGGGGC- -5'
29026 3' -58.1 NC_006146.1 + 160574 0.67 0.794104
Target:  5'- aCGCUgaUGAUGagCUGCAugugugcgugcuUGCCCCCGa -3'
miRNA:   3'- cGCGAg-ACUACggGAUGU------------ACGGGGGC- -5'
29026 3' -58.1 NC_006146.1 + 13061 0.67 0.794104
Target:  5'- gGCGCUC-GGUGCCCgucc--CCUCCGg -3'
miRNA:   3'- -CGCGAGaCUACGGGauguacGGGGGC- -5'
29026 3' -58.1 NC_006146.1 + 103753 0.67 0.794104
Target:  5'- cGCGCUCagGAgcgGCCa-GCG-GCUCCCGg -3'
miRNA:   3'- -CGCGAGa-CUa--CGGgaUGUaCGGGGGC- -5'
29026 3' -58.1 NC_006146.1 + 114124 0.67 0.785151
Target:  5'- cGCGCUCaccGAggagGCCUgcGCGUGCUCCgCGa -3'
miRNA:   3'- -CGCGAGa--CUa---CGGGa-UGUACGGGG-GC- -5'
29026 3' -58.1 NC_006146.1 + 33210 0.67 0.785151
Target:  5'- gGUGCUcCUGGUGCuCCgggGCAgccgggugGCCgCCGg -3'
miRNA:   3'- -CGCGA-GACUACG-GGa--UGUa-------CGGgGGC- -5'
29026 3' -58.1 NC_006146.1 + 75689 0.67 0.776065
Target:  5'- uGCGCUCUGGUaCUCUugGCAgaccaCCCCGg -3'
miRNA:   3'- -CGCGAGACUAcGGGA--UGUacg--GGGGC- -5'
29026 3' -58.1 NC_006146.1 + 120765 0.67 0.776065
Target:  5'- aGCGCUg-GcgGCgCCU-CAUGUCCCUGg -3'
miRNA:   3'- -CGCGAgaCuaCG-GGAuGUACGGGGGC- -5'
29026 3' -58.1 NC_006146.1 + 111842 0.67 0.766855
Target:  5'- -aGCUCguc-GCCCUGCGUGUCggCCCGc -3'
miRNA:   3'- cgCGAGacuaCGGGAUGUACGG--GGGC- -5'
29026 3' -58.1 NC_006146.1 + 64740 0.67 0.766855
Target:  5'- uGCGUUCUgGAUGgCCUGCAUGCgagcgUCCa -3'
miRNA:   3'- -CGCGAGA-CUACgGGAUGUACGg----GGGc -5'
29026 3' -58.1 NC_006146.1 + 168411 0.68 0.75753
Target:  5'- -aGCUCgucgGCCagCUGCcUGCCCCCGc -3'
miRNA:   3'- cgCGAGacuaCGG--GAUGuACGGGGGC- -5'
29026 3' -58.1 NC_006146.1 + 61770 0.68 0.75753
Target:  5'- gGUGCUgCUGAUGCCCaagACGgcaGCCUCg- -3'
miRNA:   3'- -CGCGA-GACUACGGGa--UGUa--CGGGGgc -5'
29026 3' -58.1 NC_006146.1 + 23788 0.68 0.748098
Target:  5'- uGCGCgUCUGggGCCC-GCugaGCCCCa- -3'
miRNA:   3'- -CGCG-AGACuaCGGGaUGua-CGGGGgc -5'
29026 3' -58.1 NC_006146.1 + 205 0.68 0.748098
Target:  5'- cGCGC-C-GGUGCCCccGCGacgGUCCCCGg -3'
miRNA:   3'- -CGCGaGaCUACGGGa-UGUa--CGGGGGC- -5'
29026 3' -58.1 NC_006146.1 + 2068 0.68 0.748098
Target:  5'- cGCGC-C-GGUGCCCccGCGaggGUCCCCGg -3'
miRNA:   3'- -CGCGaGaCUACGGGa-UGUa--CGGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.