miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29026 3' -58.1 NC_006146.1 + 205 0.68 0.748098
Target:  5'- cGCGC-C-GGUGCCCccGCGacgGUCCCCGg -3'
miRNA:   3'- -CGCGaGaCUACGGGa-UGUa--CGGGGGC- -5'
29026 3' -58.1 NC_006146.1 + 1136 0.68 0.748098
Target:  5'- cGCGC-C-GGUGCCCccGCGaggGUCCCCGg -3'
miRNA:   3'- -CGCGaGaCUACGGGa-UGUa--CGGGGGC- -5'
29026 3' -58.1 NC_006146.1 + 1337 0.66 0.8366
Target:  5'- cGCGCUCgg--GCCCcGgGgaaGCCCCCc -3'
miRNA:   3'- -CGCGAGacuaCGGGaUgUa--CGGGGGc -5'
29026 3' -58.1 NC_006146.1 + 2068 0.68 0.748098
Target:  5'- cGCGC-C-GGUGCCCccGCGaggGUCCCCGg -3'
miRNA:   3'- -CGCGaGaCUACGGGa-UGUa--CGGGGGC- -5'
29026 3' -58.1 NC_006146.1 + 2269 0.66 0.8366
Target:  5'- cGCGCUCgg--GCCCcGgGgaaGCCCCCc -3'
miRNA:   3'- -CGCGAGacuaCGGGaUgUa--CGGGGGc -5'
29026 3' -58.1 NC_006146.1 + 3000 0.68 0.748098
Target:  5'- cGCGC-C-GGUGCCCccGCGaggGUCCCCGg -3'
miRNA:   3'- -CGCGaGaCUACGGGa-UGUa--CGGGGGC- -5'
29026 3' -58.1 NC_006146.1 + 3094 0.66 0.86001
Target:  5'- cCGCUCUGGaGCUCUucuCcgGCCUCUa -3'
miRNA:   3'- cGCGAGACUaCGGGAu--GuaCGGGGGc -5'
29026 3' -58.1 NC_006146.1 + 3201 0.66 0.8366
Target:  5'- cGCGCUCgg--GCCCcGgGgaaGCCCCCc -3'
miRNA:   3'- -CGCGAGacuaCGGGaUgUa--CGGGGGc -5'
29026 3' -58.1 NC_006146.1 + 5130 0.66 0.819244
Target:  5'- -gGCUCUGAUugaucgcucacccGCCCUGCGagacGCCCUg- -3'
miRNA:   3'- cgCGAGACUA-------------CGGGAUGUa---CGGGGgc -5'
29026 3' -58.1 NC_006146.1 + 13061 0.67 0.794104
Target:  5'- gGCGCUC-GGUGCCCgucc--CCUCCGg -3'
miRNA:   3'- -CGCGAGaCUACGGGauguacGGGGGC- -5'
29026 3' -58.1 NC_006146.1 + 14186 0.69 0.689752
Target:  5'- uGCcCUCUGA-GCCCccuuUGCCCCCu -3'
miRNA:   3'- -CGcGAGACUaCGGGauguACGGGGGc -5'
29026 3' -58.1 NC_006146.1 + 17264 0.69 0.689752
Target:  5'- uGCcCUCUGA-GCCCccuuUGCCCCCu -3'
miRNA:   3'- -CGcGAGACUaCGGGauguACGGGGGc -5'
29026 3' -58.1 NC_006146.1 + 20342 0.69 0.689752
Target:  5'- uGCcCUCUGA-GCCCccuuUGCCCCCu -3'
miRNA:   3'- -CGcGAGACUaCGGGauguACGGGGGc -5'
29026 3' -58.1 NC_006146.1 + 23420 0.69 0.689752
Target:  5'- uGCcCUCUGA-GCCCccuuUGCCCCCu -3'
miRNA:   3'- -CGcGAGACUaCGGGauguACGGGGGc -5'
29026 3' -58.1 NC_006146.1 + 23788 0.68 0.748098
Target:  5'- uGCGCgUCUGggGCCC-GCugaGCCCCa- -3'
miRNA:   3'- -CGCG-AGACuaCGGGaUGua-CGGGGgc -5'
29026 3' -58.1 NC_006146.1 + 26498 0.69 0.689752
Target:  5'- uGCcCUCUGA-GCCCccuuUGCCCCCu -3'
miRNA:   3'- -CGcGAGACUaCGGGauguACGGGGGc -5'
29026 3' -58.1 NC_006146.1 + 29576 0.69 0.689752
Target:  5'- uGCcCUCUGA-GCCCccuuUGCCCCCu -3'
miRNA:   3'- -CGcGAGACUaCGGGauguACGGGGGc -5'
29026 3' -58.1 NC_006146.1 + 32975 0.66 0.86001
Target:  5'- gGCGCgCUGG-GUCgCgGC-UGCCCCCGg -3'
miRNA:   3'- -CGCGaGACUaCGG-GaUGuACGGGGGC- -5'
29026 3' -58.1 NC_006146.1 + 33210 0.67 0.785151
Target:  5'- gGUGCUcCUGGUGCuCCgggGCAgccgggugGCCgCCGg -3'
miRNA:   3'- -CGCGA-GACUACG-GGa--UGUa-------CGGgGGC- -5'
29026 3' -58.1 NC_006146.1 + 40514 0.67 0.81158
Target:  5'- aUGCUCgGggGCCC-ACGUGUuuUCCCGg -3'
miRNA:   3'- cGCGAGaCuaCGGGaUGUACG--GGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.