miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29026 3' -58.1 NC_006146.1 + 61705 1.11 0.001495
Target:  5'- uGCGCUCUGAUGCCCUACAUGCCCCCGg -3'
miRNA:   3'- -CGCGAGACUACGGGAUGUACGGGGGC- -5'
29026 3' -58.1 NC_006146.1 + 64740 0.67 0.766855
Target:  5'- uGCGUUCUgGAUGgCCUGCAUGCgagcgUCCa -3'
miRNA:   3'- -CGCGAGA-CUACgGGAUGUACGg----GGGc -5'
29026 3' -58.1 NC_006146.1 + 33210 0.67 0.785151
Target:  5'- gGUGCUcCUGGUGCuCCgggGCAgccgggugGCCgCCGg -3'
miRNA:   3'- -CGCGA-GACUACG-GGa--UGUa-------CGGgGGC- -5'
29026 3' -58.1 NC_006146.1 + 164966 0.66 0.86001
Target:  5'- aUGgUCUGG-GCCCU-CAuUGCCUCCGu -3'
miRNA:   3'- cGCgAGACUaCGGGAuGU-ACGGGGGC- -5'
29026 3' -58.1 NC_006146.1 + 68704 0.7 0.609658
Target:  5'- aGCGCUUUGAcGCCgUcCGcGUCCCCGa -3'
miRNA:   3'- -CGCGAGACUaCGGgAuGUaCGGGGGC- -5'
29026 3' -58.1 NC_006146.1 + 65123 0.7 0.639777
Target:  5'- -aGCcCUgGGUGCCCUugGUGCUCuuGg -3'
miRNA:   3'- cgCGaGA-CUACGGGAugUACGGGggC- -5'
29026 3' -58.1 NC_006146.1 + 14186 0.69 0.689752
Target:  5'- uGCcCUCUGA-GCCCccuuUGCCCCCu -3'
miRNA:   3'- -CGcGAGACUaCGGGauguACGGGGGc -5'
29026 3' -58.1 NC_006146.1 + 17264 0.69 0.689752
Target:  5'- uGCcCUCUGA-GCCCccuuUGCCCCCu -3'
miRNA:   3'- -CGcGAGACUaCGGGauguACGGGGGc -5'
29026 3' -58.1 NC_006146.1 + 26498 0.69 0.689752
Target:  5'- uGCcCUCUGA-GCCCccuuUGCCCCCu -3'
miRNA:   3'- -CGcGAGACUaCGGGauguACGGGGGc -5'
29026 3' -58.1 NC_006146.1 + 61770 0.68 0.75753
Target:  5'- gGUGCUgCUGAUGCCCaagACGgcaGCCUCg- -3'
miRNA:   3'- -CGCGA-GACUACGGGa--UGUa--CGGGGgc -5'
29026 3' -58.1 NC_006146.1 + 167650 0.69 0.699642
Target:  5'- gGCGCgugCcgGggGCCCggggGCGUGUCCCgCGa -3'
miRNA:   3'- -CGCGa--Ga-CuaCGGGa---UGUACGGGG-GC- -5'
29026 3' -58.1 NC_006146.1 + 23420 0.69 0.689752
Target:  5'- uGCcCUCUGA-GCCCccuuUGCCCCCu -3'
miRNA:   3'- -CGcGAGACUaCGGGauguACGGGGGc -5'
29026 3' -58.1 NC_006146.1 + 95399 0.75 0.362435
Target:  5'- gGCaGCUCacgcUGGUGCuCUUGCcgGCCCCCGc -3'
miRNA:   3'- -CG-CGAG----ACUACG-GGAUGuaCGGGGGC- -5'
29026 3' -58.1 NC_006146.1 + 41771 0.69 0.706532
Target:  5'- uGCGCUCUGuuuuCCCUGCGUuuucugagagaauaGCCgCCUGg -3'
miRNA:   3'- -CGCGAGACuac-GGGAUGUA--------------CGG-GGGC- -5'
29026 3' -58.1 NC_006146.1 + 65202 0.72 0.492324
Target:  5'- gGCGCUCUGGggGCCCUGgGaGCCCg-- -3'
miRNA:   3'- -CGCGAGACUa-CGGGAUgUaCGGGggc -5'
29026 3' -58.1 NC_006146.1 + 20342 0.69 0.689752
Target:  5'- uGCcCUCUGA-GCCCccuuUGCCCCCu -3'
miRNA:   3'- -CGcGAGACUaCGGGauguACGGGGGc -5'
29026 3' -58.1 NC_006146.1 + 58951 0.68 0.728948
Target:  5'- uGCGCUgaGGUGCU--GCA-GCCCUCGa -3'
miRNA:   3'- -CGCGAgaCUACGGgaUGUaCGGGGGC- -5'
29026 3' -58.1 NC_006146.1 + 75689 0.67 0.776065
Target:  5'- uGCGCUCUGGUaCUCUugGCAgaccaCCCCGg -3'
miRNA:   3'- -CGCGAGACUAcGGGA--UGUacg--GGGGC- -5'
29026 3' -58.1 NC_006146.1 + 69473 0.71 0.569756
Target:  5'- -gGCUUaaccagGAUGCCCUGCAUGgCCaggCCCGa -3'
miRNA:   3'- cgCGAGa-----CUACGGGAUGUAC-GG---GGGC- -5'
29026 3' -58.1 NC_006146.1 + 55921 0.69 0.683795
Target:  5'- -gGCcUUGAUGUCCgcggccgugggcugcUGCGUGCCCCCc -3'
miRNA:   3'- cgCGaGACUACGGG---------------AUGUACGGGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.