miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29026 5' -51.1 NC_006146.1 + 37915 0.66 0.996435
Target:  5'- cGCUGGGGGACugcuaAGCAgggacacauagaaggUCUuAUUGGGg -3'
miRNA:   3'- cCGACUCCUUGc----UCGU---------------AGAcUAACCC- -5'
29026 5' -51.1 NC_006146.1 + 158308 0.66 0.996201
Target:  5'- aGGCcucGAGGGcCGGGU-UCUGGgcuugUGGGg -3'
miRNA:   3'- -CCGa--CUCCUuGCUCGuAGACUa----ACCC- -5'
29026 5' -51.1 NC_006146.1 + 83055 0.66 0.996201
Target:  5'- aGGCaGGGGAAUG-GCGUCUGugaccuccUGGu -3'
miRNA:   3'- -CCGaCUCCUUGCuCGUAGACua------ACCc -5'
29026 5' -51.1 NC_006146.1 + 142917 0.66 0.996201
Target:  5'- aGGCcucGAGGGcCGGGU-UCUGGgcuugUGGGg -3'
miRNA:   3'- -CCGa--CUCCUuGCUCGuAGACUa----ACCC- -5'
29026 5' -51.1 NC_006146.1 + 145995 0.66 0.996201
Target:  5'- aGGCcucGAGGGcCGGGU-UCUGGgcuugUGGGg -3'
miRNA:   3'- -CCGa--CUCCUuGCUCGuAGACUa----ACCC- -5'
29026 5' -51.1 NC_006146.1 + 149073 0.66 0.996201
Target:  5'- aGGCcucGAGGGcCGGGU-UCUGGgcuugUGGGg -3'
miRNA:   3'- -CCGa--CUCCUuGCUCGuAGACUa----ACCC- -5'
29026 5' -51.1 NC_006146.1 + 152151 0.66 0.996201
Target:  5'- aGGCcucGAGGGcCGGGU-UCUGGgcuugUGGGg -3'
miRNA:   3'- -CCGa--CUCCUuGCUCGuAGACUa----ACCC- -5'
29026 5' -51.1 NC_006146.1 + 155229 0.66 0.996201
Target:  5'- aGGCcucGAGGGcCGGGU-UCUGGgcuugUGGGg -3'
miRNA:   3'- -CCGa--CUCCUuGCUCGuAGACUa----ACCC- -5'
29026 5' -51.1 NC_006146.1 + 138118 0.66 0.99556
Target:  5'- uGCUGcGGGGAUaGGCAgccggCUGGaUGGGg -3'
miRNA:   3'- cCGAC-UCCUUGcUCGUa----GACUaACCC- -5'
29026 5' -51.1 NC_006146.1 + 75277 0.66 0.994013
Target:  5'- uGGCcGAGGAGCcgaGAGCGUCc----GGGa -3'
miRNA:   3'- -CCGaCUCCUUG---CUCGUAGacuaaCCC- -5'
29026 5' -51.1 NC_006146.1 + 51479 0.66 0.993091
Target:  5'- gGGCgGGGGcuGCG-GCGUCggGAgUUGGGa -3'
miRNA:   3'- -CCGaCUCCu-UGCuCGUAGa-CU-AACCC- -5'
29026 5' -51.1 NC_006146.1 + 55016 0.66 0.993091
Target:  5'- gGGCgggauGGGGGCGGGCGg--GAUgGGGg -3'
miRNA:   3'- -CCGac---UCCUUGCUCGUagaCUAaCCC- -5'
29026 5' -51.1 NC_006146.1 + 5646 0.67 0.992486
Target:  5'- uGGCgggggacaGGGGGACGAGCAccagccgcgggugcuUCUGAUUa-- -3'
miRNA:   3'- -CCGa-------CUCCUUGCUCGU---------------AGACUAAccc -5'
29026 5' -51.1 NC_006146.1 + 43208 0.67 0.99206
Target:  5'- aGGC-GGGGAugGGGCGcugCUGGUgagaGGa -3'
miRNA:   3'- -CCGaCUCCUugCUCGUa--GACUAa---CCc -5'
29026 5' -51.1 NC_006146.1 + 39884 0.67 0.990909
Target:  5'- aGGCUGAGGc-UGAGCGgcCUGcg-GGGc -3'
miRNA:   3'- -CCGACUCCuuGCUCGUa-GACuaaCCC- -5'
29026 5' -51.1 NC_006146.1 + 134693 0.67 0.989631
Target:  5'- cGGCUugcgcucccGGGGAGCccaGGUGUCUGAgaacUGGGc -3'
miRNA:   3'- -CCGA---------CUCCUUGc--UCGUAGACUa---ACCC- -5'
29026 5' -51.1 NC_006146.1 + 147659 0.67 0.988365
Target:  5'- gGGCUGGacucGGGGCGAGUGgacgggccugggaggCUGGUucUGGGc -3'
miRNA:   3'- -CCGACU----CCUUGCUCGUa--------------GACUA--ACCC- -5'
29026 5' -51.1 NC_006146.1 + 124524 0.67 0.986659
Target:  5'- uGGC-GAGGGACGGGgGcCUGg--GGGa -3'
miRNA:   3'- -CCGaCUCCUUGCUCgUaGACuaaCCC- -5'
29026 5' -51.1 NC_006146.1 + 51540 0.67 0.986659
Target:  5'- gGGCugUGAGGGAUGGGgAUUacuggagaUGggUGGGg -3'
miRNA:   3'- -CCG--ACUCCUUGCUCgUAG--------ACuaACCC- -5'
29026 5' -51.1 NC_006146.1 + 169160 0.68 0.984946
Target:  5'- cGGCggGAGGGGCcGGCGcCUGcagGGGg -3'
miRNA:   3'- -CCGa-CUCCUUGcUCGUaGACuaaCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.