miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29026 5' -51.1 NC_006146.1 + 61741 1.13 0.005624
Target:  5'- cGGCUGAGGAACGAGCAUCUGAUUGGGc -3'
miRNA:   3'- -CCGACUCCUUGCUCGUAGACUAACCC- -5'
29026 5' -51.1 NC_006146.1 + 24202 0.78 0.627292
Target:  5'- gGGCUGGGccuGCGAGguUCUG-UUGGGg -3'
miRNA:   3'- -CCGACUCcu-UGCUCguAGACuAACCC- -5'
29026 5' -51.1 NC_006146.1 + 92320 0.76 0.711199
Target:  5'- uGCUGGGGGGCGGGCccggccuggggcagCUGAUaUGGGg -3'
miRNA:   3'- cCGACUCCUUGCUCGua------------GACUA-ACCC- -5'
29026 5' -51.1 NC_006146.1 + 149947 0.75 0.75027
Target:  5'- gGGUUGAGGGGCGcccaGGCGUUggGAgUGGGg -3'
miRNA:   3'- -CCGACUCCUUGC----UCGUAGa-CUaACCC- -5'
29026 5' -51.1 NC_006146.1 + 44789 0.73 0.849782
Target:  5'- gGGCUcaGGGGGGCGcAGCGUCUaAUacUGGGa -3'
miRNA:   3'- -CCGA--CUCCUUGC-UCGUAGAcUA--ACCC- -5'
29026 5' -51.1 NC_006146.1 + 153520 0.73 0.849782
Target:  5'- aGGCUGuGGAugGAGUGggggGcgUGGGg -3'
miRNA:   3'- -CCGACuCCUugCUCGUaga-CuaACCC- -5'
29026 5' -51.1 NC_006146.1 + 71456 0.73 0.852998
Target:  5'- uGGCgccGAGGAGCGAGgGccucaugcuccuggaUCUGAacUUGGGc -3'
miRNA:   3'- -CCGa--CUCCUUGCUCgU---------------AGACU--AACCC- -5'
29026 5' -51.1 NC_006146.1 + 125610 0.73 0.864757
Target:  5'- cGGCUuuccaccGAGGGugGGGCAUgggCUGGUgagcgGGGa -3'
miRNA:   3'- -CCGA-------CUCCUugCUCGUA---GACUAa----CCC- -5'
29026 5' -51.1 NC_006146.1 + 161757 0.72 0.87307
Target:  5'- cGGCUGAGGuccgAGgGGGCGcCUGGgcgGGGg -3'
miRNA:   3'- -CCGACUCC----UUgCUCGUaGACUaa-CCC- -5'
29026 5' -51.1 NC_006146.1 + 38308 0.72 0.900961
Target:  5'- aGGCUGAGGGAguaGAGUAUUUGcaUGcGGa -3'
miRNA:   3'- -CCGACUCCUUg--CUCGUAGACuaAC-CC- -5'
29026 5' -51.1 NC_006146.1 + 150535 0.71 0.91347
Target:  5'- cGGCUGGGGGuCGGGCuggcCUGccagGGGg -3'
miRNA:   3'- -CCGACUCCUuGCUCGua--GACuaa-CCC- -5'
29026 5' -51.1 NC_006146.1 + 141301 0.71 0.91347
Target:  5'- cGGCUGGGGGuCGGGCuggcCUGccagGGGg -3'
miRNA:   3'- -CCGACUCCUuGCUCGua--GACuaa-CCC- -5'
29026 5' -51.1 NC_006146.1 + 144379 0.71 0.91347
Target:  5'- cGGCUGGGGGuCGGGCuggcCUGccagGGGg -3'
miRNA:   3'- -CCGACUCCUuGCUCGua--GACuaa-CCC- -5'
29026 5' -51.1 NC_006146.1 + 156690 0.71 0.91347
Target:  5'- cGGCUGGGGGuCGGGCuggcCUGccagGGGg -3'
miRNA:   3'- -CCGACUCCUuGCUCGua--GACuaa-CCC- -5'
29026 5' -51.1 NC_006146.1 + 153613 0.71 0.91347
Target:  5'- cGGCUGGGGGuCGGGCuggcCUGccagGGGg -3'
miRNA:   3'- -CCGACUCCUuGCUCGua--GACuaa-CCC- -5'
29026 5' -51.1 NC_006146.1 + 147457 0.71 0.91347
Target:  5'- cGGCUGGGGGuCGGGCuggcCUGccagGGGg -3'
miRNA:   3'- -CCGACUCCUuGCUCGua--GACuaa-CCC- -5'
29026 5' -51.1 NC_006146.1 + 92260 0.71 0.919356
Target:  5'- uGCUGGGGGGCGGGCccggcCUGGggcugcugcUGGGg -3'
miRNA:   3'- cCGACUCCUUGCUCGua---GACUa--------ACCC- -5'
29026 5' -51.1 NC_006146.1 + 92021 0.71 0.919356
Target:  5'- uGCUGGGGGGCGGGCccggcCUGGggcugcugcUGGGg -3'
miRNA:   3'- cCGACUCCUUGCUCGua---GACUa--------ACCC- -5'
29026 5' -51.1 NC_006146.1 + 92110 0.71 0.919356
Target:  5'- uGCUGGGGGGCGGGCccggcCUGGggcugcugcUGGGg -3'
miRNA:   3'- cCGACUCCUUGCUCGua---GACUa--------ACCC- -5'
29026 5' -51.1 NC_006146.1 + 92170 0.71 0.919356
Target:  5'- uGCUGGGGGGCGGGCccggcCUGGggcugcugcUGGGg -3'
miRNA:   3'- cCGACUCCUUGCUCGua---GACUa--------ACCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.