miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29026 5' -51.1 NC_006146.1 + 167296 0.68 0.984946
Target:  5'- cGGCggGAGGGGCcGGCGcCUGcagGGGg -3'
miRNA:   3'- -CCGa-CUCCUUGcUCGUaGACuaaCCC- -5'
29026 5' -51.1 NC_006146.1 + 63740 0.68 0.984946
Target:  5'- cGGCgGAGGcGACGuGUuUCUGG-UGGGc -3'
miRNA:   3'- -CCGaCUCC-UUGCuCGuAGACUaACCC- -5'
29026 5' -51.1 NC_006146.1 + 168228 0.68 0.984946
Target:  5'- cGGCggGAGGGGCcGGCGcCUGcagGGGg -3'
miRNA:   3'- -CCGa-CUCCUUGcUCGUaGACuaaCCC- -5'
29026 5' -51.1 NC_006146.1 + 15284 0.68 0.983071
Target:  5'- cGGCUGAaccGGAGCGAGgGg--GAggaGGGg -3'
miRNA:   3'- -CCGACU---CCUUGCUCgUagaCUaa-CCC- -5'
29026 5' -51.1 NC_006146.1 + 120508 0.68 0.981024
Target:  5'- cGGCcGAGGAcGCGAGCcgCgugGAUgcggcggcGGGa -3'
miRNA:   3'- -CCGaCUCCU-UGCUCGuaGa--CUAa-------CCC- -5'
29026 5' -51.1 NC_006146.1 + 39967 0.68 0.981024
Target:  5'- cGGCUGGGGAAgGAGaggCUGAggcugcUGcGGc -3'
miRNA:   3'- -CCGACUCCUUgCUCguaGACUa-----AC-CC- -5'
29026 5' -51.1 NC_006146.1 + 38947 0.68 0.981024
Target:  5'- cGGUcGAGGGugGccuuGGCAUCcGggUGGGc -3'
miRNA:   3'- -CCGaCUCCUugC----UCGUAGaCuaACCC- -5'
29026 5' -51.1 NC_006146.1 + 94882 0.68 0.978798
Target:  5'- uGGCUGaAGGAGgacUGgaaGGCGUCUGucUGGGu -3'
miRNA:   3'- -CCGAC-UCCUU---GC---UCGUAGACuaACCC- -5'
29026 5' -51.1 NC_006146.1 + 129246 0.68 0.978798
Target:  5'- gGGCccaggUGAGGcGCGAGgGUCaggGAUgUGGGg -3'
miRNA:   3'- -CCG-----ACUCCuUGCUCgUAGa--CUA-ACCC- -5'
29026 5' -51.1 NC_006146.1 + 98303 0.68 0.976384
Target:  5'- gGGCUGAGG-GCGuGCuccguggccGUCUGGcacGGGg -3'
miRNA:   3'- -CCGACUCCuUGCuCG---------UAGACUaa-CCC- -5'
29026 5' -51.1 NC_006146.1 + 107092 0.69 0.973775
Target:  5'- aGGCcgGGGGAGUGGGUggGUCUGGgaaGGGg -3'
miRNA:   3'- -CCGa-CUCCUUGCUCG--UAGACUaa-CCC- -5'
29026 5' -51.1 NC_006146.1 + 59784 0.69 0.970962
Target:  5'- gGGUUGAGGGugucgacccgGCaGAGCuccagCUGAUUGaGGg -3'
miRNA:   3'- -CCGACUCCU----------UG-CUCGua---GACUAAC-CC- -5'
29026 5' -51.1 NC_006146.1 + 141503 0.69 0.968251
Target:  5'- gGGCUGGacucGGGGCGAGUGgacgggccugggaggCUGGUucUGGGg -3'
miRNA:   3'- -CCGACU----CCUUGCUCGUa--------------GACUA--ACCC- -5'
29026 5' -51.1 NC_006146.1 + 144581 0.69 0.968251
Target:  5'- gGGCUGGacucGGGGCGAGUGgacgggccugggaggCUGGUucUGGGg -3'
miRNA:   3'- -CCGACU----CCUUGCUCGUa--------------GACUA--ACCC- -5'
29026 5' -51.1 NC_006146.1 + 150736 0.69 0.968251
Target:  5'- gGGCUGGacucGGGGCGAGUGgacgggccugggaggCUGGUucUGGGg -3'
miRNA:   3'- -CCGACU----CCUUGCUCGUa--------------GACUA--ACCC- -5'
29026 5' -51.1 NC_006146.1 + 153814 0.69 0.968251
Target:  5'- gGGCUGGacucGGGGCGAGUGgacgggccugggaggCUGGUucUGGGg -3'
miRNA:   3'- -CCGACU----CCUUGCUCGUa--------------GACUA--ACCC- -5'
29026 5' -51.1 NC_006146.1 + 156892 0.69 0.968251
Target:  5'- gGGCUGGacucGGGGCGAGUGgacgggccugggaggCUGGUucUGGGg -3'
miRNA:   3'- -CCGACU----CCUUGCUCGUa--------------GACUA--ACCC- -5'
29026 5' -51.1 NC_006146.1 + 41143 0.69 0.9647
Target:  5'- cGCUcccugGAGGGACGAGgA-CUGGUcGGGg -3'
miRNA:   3'- cCGA-----CUCCUUGCUCgUaGACUAaCCC- -5'
29026 5' -51.1 NC_006146.1 + 138222 0.69 0.961238
Target:  5'- gGGCUGAcgGGGAUaAGCAUCccgcUGAaugUGGGg -3'
miRNA:   3'- -CCGACU--CCUUGcUCGUAG----ACUa--ACCC- -5'
29026 5' -51.1 NC_006146.1 + 51353 0.7 0.957548
Target:  5'- gGGCUGAGGAGuugGAGUAgccgcUUGAggGGGc -3'
miRNA:   3'- -CCGACUCCUUg--CUCGUa----GACUaaCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.