miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29026 5' -51.1 NC_006146.1 + 5646 0.67 0.992486
Target:  5'- uGGCgggggacaGGGGGACGAGCAccagccgcgggugcuUCUGAUUa-- -3'
miRNA:   3'- -CCGa-------CUCCUUGCUCGU---------------AGACUAAccc -5'
29026 5' -51.1 NC_006146.1 + 15284 0.68 0.983071
Target:  5'- cGGCUGAaccGGAGCGAGgGg--GAggaGGGg -3'
miRNA:   3'- -CCGACU---CCUUGCUCgUagaCUaa-CCC- -5'
29026 5' -51.1 NC_006146.1 + 24202 0.78 0.627292
Target:  5'- gGGCUGGGccuGCGAGguUCUG-UUGGGg -3'
miRNA:   3'- -CCGACUCcu-UGCUCguAGACuAACCC- -5'
29026 5' -51.1 NC_006146.1 + 26290 0.7 0.949463
Target:  5'- gGGUgGAGGGGCcGGCAUCUGGaggcgUGGa -3'
miRNA:   3'- -CCGaCUCCUUGcUCGUAGACUa----ACCc -5'
29026 5' -51.1 NC_006146.1 + 34264 0.7 0.944152
Target:  5'- cGGCUGGGGGuugugcacccccCGAGCGUCUGGa---- -3'
miRNA:   3'- -CCGACUCCUu-----------GCUCGUAGACUaaccc -5'
29026 5' -51.1 NC_006146.1 + 37915 0.66 0.996435
Target:  5'- cGCUGGGGGACugcuaAGCAgggacacauagaaggUCUuAUUGGGg -3'
miRNA:   3'- cCGACUCCUUGc----UCGU---------------AGAcUAACCC- -5'
29026 5' -51.1 NC_006146.1 + 38308 0.72 0.900961
Target:  5'- aGGCUGAGGGAguaGAGUAUUUGcaUGcGGa -3'
miRNA:   3'- -CCGACUCCUUg--CUCGUAGACuaAC-CC- -5'
29026 5' -51.1 NC_006146.1 + 38947 0.68 0.981024
Target:  5'- cGGUcGAGGGugGccuuGGCAUCcGggUGGGc -3'
miRNA:   3'- -CCGaCUCCUugC----UCGUAGaCuaACCC- -5'
29026 5' -51.1 NC_006146.1 + 39884 0.67 0.990909
Target:  5'- aGGCUGAGGc-UGAGCGgcCUGcg-GGGc -3'
miRNA:   3'- -CCGACUCCuuGCUCGUa-GACuaaCCC- -5'
29026 5' -51.1 NC_006146.1 + 39967 0.68 0.981024
Target:  5'- cGGCUGGGGAAgGAGaggCUGAggcugcUGcGGc -3'
miRNA:   3'- -CCGACUCCUUgCUCguaGACUa-----AC-CC- -5'
29026 5' -51.1 NC_006146.1 + 41143 0.69 0.9647
Target:  5'- cGCUcccugGAGGGACGAGgA-CUGGUcGGGg -3'
miRNA:   3'- cCGA-----CUCCUUGCUCgUaGACUAaCCC- -5'
29026 5' -51.1 NC_006146.1 + 43208 0.67 0.99206
Target:  5'- aGGC-GGGGAugGGGCGcugCUGGUgagaGGa -3'
miRNA:   3'- -CCGaCUCCUugCUCGUa--GACUAa---CCc -5'
29026 5' -51.1 NC_006146.1 + 44789 0.73 0.849782
Target:  5'- gGGCUcaGGGGGGCGcAGCGUCUaAUacUGGGa -3'
miRNA:   3'- -CCGA--CUCCUUGC-UCGUAGAcUA--ACCC- -5'
29026 5' -51.1 NC_006146.1 + 51143 0.7 0.940415
Target:  5'- aGGCUGAGGAGuCGcuguAGCuGUCgGAgUGGGc -3'
miRNA:   3'- -CCGACUCCUU-GC----UCG-UAGaCUaACCC- -5'
29026 5' -51.1 NC_006146.1 + 51233 0.7 0.957548
Target:  5'- gGGCUGAGGAGuugGAGUAgccgcUUGAggGGGc -3'
miRNA:   3'- -CCGACUCCUUg--CUCGUa----GACUaaCCC- -5'
29026 5' -51.1 NC_006146.1 + 51293 0.7 0.957548
Target:  5'- gGGCUGAGGAGuugGAGUAgccgcUUGAggGGGc -3'
miRNA:   3'- -CCGACUCCUUg--CUCGUa----GACUaaCCC- -5'
29026 5' -51.1 NC_006146.1 + 51353 0.7 0.957548
Target:  5'- gGGCUGAGGAGuugGAGUAgccgcUUGAggGGGc -3'
miRNA:   3'- -CCGACUCCUUg--CUCGUa----GACUaaCCC- -5'
29026 5' -51.1 NC_006146.1 + 51479 0.66 0.993091
Target:  5'- gGGCgGGGGcuGCG-GCGUCggGAgUUGGGa -3'
miRNA:   3'- -CCGaCUCCu-UGCuCGUAGa-CU-AACCC- -5'
29026 5' -51.1 NC_006146.1 + 51540 0.67 0.986659
Target:  5'- gGGCugUGAGGGAUGGGgAUUacuggagaUGggUGGGg -3'
miRNA:   3'- -CCG--ACUCCUUGCUCgUAG--------ACuaACCC- -5'
29026 5' -51.1 NC_006146.1 + 55016 0.66 0.993091
Target:  5'- gGGCgggauGGGGGCGGGCGg--GAUgGGGg -3'
miRNA:   3'- -CCGac---UCCUUGCUCGUagaCUAaCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.