miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29026 5' -51.1 NC_006146.1 + 61741 1.13 0.005624
Target:  5'- cGGCUGAGGAACGAGCAUCUGAUUGGGc -3'
miRNA:   3'- -CCGACUCCUUGCUCGUAGACUAACCC- -5'
29026 5' -51.1 NC_006146.1 + 169160 0.68 0.984946
Target:  5'- cGGCggGAGGGGCcGGCGcCUGcagGGGg -3'
miRNA:   3'- -CCGa-CUCCUUGcUCGUaGACuaaCCC- -5'
29026 5' -51.1 NC_006146.1 + 134693 0.67 0.989631
Target:  5'- cGGCUugcgcucccGGGGAGCccaGGUGUCUGAgaacUGGGc -3'
miRNA:   3'- -CCGA---------CUCCUUGc--UCGUAGACUa---ACCC- -5'
29026 5' -51.1 NC_006146.1 + 37915 0.66 0.996435
Target:  5'- cGCUGGGGGACugcuaAGCAgggacacauagaaggUCUuAUUGGGg -3'
miRNA:   3'- cCGACUCCUUGc----UCGU---------------AGAcUAACCC- -5'
29026 5' -51.1 NC_006146.1 + 34264 0.7 0.944152
Target:  5'- cGGCUGGGGGuugugcacccccCGAGCGUCUGGa---- -3'
miRNA:   3'- -CCGACUCCUu-----------GCUCGUAGACUaaccc -5'
29026 5' -51.1 NC_006146.1 + 138094 0.7 0.944152
Target:  5'- cGGCUGGGGGuugugcacccccCGAGCGUCUGGa---- -3'
miRNA:   3'- -CCGACUCCUu-----------GCUCGUAGACUaaccc -5'
29026 5' -51.1 NC_006146.1 + 96810 0.7 0.956396
Target:  5'- aGCUGcaggcuucccugguGGGGACGGGCGggCaGGUUGGGc -3'
miRNA:   3'- cCGAC--------------UCCUUGCUCGUa-GaCUAACCC- -5'
29026 5' -51.1 NC_006146.1 + 51233 0.7 0.957548
Target:  5'- gGGCUGAGGAGuugGAGUAgccgcUUGAggGGGc -3'
miRNA:   3'- -CCGACUCCUUg--CUCGUa----GACUaaCCC- -5'
29026 5' -51.1 NC_006146.1 + 41143 0.69 0.9647
Target:  5'- cGCUcccugGAGGGACGAGgA-CUGGUcGGGg -3'
miRNA:   3'- cCGA-----CUCCUUGCUCgUaGACUAaCCC- -5'
29026 5' -51.1 NC_006146.1 + 168228 0.68 0.984946
Target:  5'- cGGCggGAGGGGCcGGCGcCUGcagGGGg -3'
miRNA:   3'- -CCGa-CUCCUUGcUCGUaGACuaaCCC- -5'
29026 5' -51.1 NC_006146.1 + 94882 0.68 0.978798
Target:  5'- uGGCUGaAGGAGgacUGgaaGGCGUCUGucUGGGu -3'
miRNA:   3'- -CCGAC-UCCUU---GC---UCGUAGACuaACCC- -5'
29026 5' -51.1 NC_006146.1 + 51353 0.7 0.957548
Target:  5'- gGGCUGAGGAGuugGAGUAgccgcUUGAggGGGc -3'
miRNA:   3'- -CCGACUCCUUg--CUCGUa----GACUaaCCC- -5'
29026 5' -51.1 NC_006146.1 + 149947 0.75 0.75027
Target:  5'- gGGUUGAGGGGCGcccaGGCGUUggGAgUGGGg -3'
miRNA:   3'- -CCGACUCCUUGC----UCGUAGa-CUaACCC- -5'
29026 5' -51.1 NC_006146.1 + 38947 0.68 0.981024
Target:  5'- cGGUcGAGGGugGccuuGGCAUCcGggUGGGc -3'
miRNA:   3'- -CCGaCUCCUugC----UCGUAGaCuaACCC- -5'
29026 5' -51.1 NC_006146.1 + 153520 0.73 0.849782
Target:  5'- aGGCUGuGGAugGAGUGggggGcgUGGGg -3'
miRNA:   3'- -CCGACuCCUugCUCGUaga-CuaACCC- -5'
29026 5' -51.1 NC_006146.1 + 51293 0.7 0.957548
Target:  5'- gGGCUGAGGAGuugGAGUAgccgcUUGAggGGGc -3'
miRNA:   3'- -CCGACUCCUUg--CUCGUa----GACUaaCCC- -5'
29026 5' -51.1 NC_006146.1 + 167296 0.68 0.984946
Target:  5'- cGGCggGAGGGGCcGGCGcCUGcagGGGg -3'
miRNA:   3'- -CCGa-CUCCUUGcUCGUaGACuaaCCC- -5'
29026 5' -51.1 NC_006146.1 + 51540 0.67 0.986659
Target:  5'- gGGCugUGAGGGAUGGGgAUUacuggagaUGggUGGGg -3'
miRNA:   3'- -CCG--ACUCCUUGCUCgUAG--------ACuaACCC- -5'
29026 5' -51.1 NC_006146.1 + 51143 0.7 0.940415
Target:  5'- aGGCUGAGGAGuCGcuguAGCuGUCgGAgUGGGc -3'
miRNA:   3'- -CCGACUCCUU-GC----UCG-UAGaCUaACCC- -5'
29026 5' -51.1 NC_006146.1 + 148840 0.7 0.953624
Target:  5'- aGCUGAGGAAauugguUGAGauUCUGAcgUGGGa -3'
miRNA:   3'- cCGACUCCUU------GCUCguAGACUa-ACCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.