miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29027 3' -58.2 NC_006146.1 + 66336 0.66 0.838703
Target:  5'- aGCCaCUGGAaugACAgcagcaucgAGCCCCUGGuGCa- -3'
miRNA:   3'- -UGG-GACCUga-UGU---------UCGGGGACU-CGca -5'
29027 3' -58.2 NC_006146.1 + 160867 0.66 0.838703
Target:  5'- cACCC--GACUGaaggcaucucuCAGGUCCCUGAGCa- -3'
miRNA:   3'- -UGGGacCUGAU-----------GUUCGGGGACUCGca -5'
29027 3' -58.2 NC_006146.1 + 71515 0.66 0.830521
Target:  5'- cCCCUGGcCgACucGCUCCUGGGCc- -3'
miRNA:   3'- uGGGACCuGaUGuuCGGGGACUCGca -5'
29027 3' -58.2 NC_006146.1 + 60368 0.66 0.830521
Target:  5'- cACUaaGGACUGCGGGUgCCUGaAGCu- -3'
miRNA:   3'- -UGGgaCCUGAUGUUCGgGGAC-UCGca -5'
29027 3' -58.2 NC_006146.1 + 65123 0.66 0.829692
Target:  5'- aGCCCUGGGugcccuuggugcuCUugGAGCUCUUGgAGCu- -3'
miRNA:   3'- -UGGGACCU-------------GAugUUCGGGGAC-UCGca -5'
29027 3' -58.2 NC_006146.1 + 66697 0.66 0.822162
Target:  5'- aACCCUcGGCUugcGGCCCCguggGGGCGc -3'
miRNA:   3'- -UGGGAcCUGAuguUCGGGGa---CUCGCa -5'
29027 3' -58.2 NC_006146.1 + 62996 0.66 0.822162
Target:  5'- gGCCCUGGGCUcCGGGagUCUG-GCGg -3'
miRNA:   3'- -UGGGACCUGAuGUUCggGGACuCGCa -5'
29027 3' -58.2 NC_006146.1 + 162364 0.66 0.813635
Target:  5'- cGCCUUGGAgaugGAGCCCCUuGGCGc -3'
miRNA:   3'- -UGGGACCUgaugUUCGGGGAcUCGCa -5'
29027 3' -58.2 NC_006146.1 + 121156 0.66 0.813635
Target:  5'- -gCCUGGGCcGCGcGCCCCUGAa--- -3'
miRNA:   3'- ugGGACCUGaUGUuCGGGGACUcgca -5'
29027 3' -58.2 NC_006146.1 + 10924 0.67 0.796105
Target:  5'- gACCCca-ACUGCGGGCUCCUGcGCGc -3'
miRNA:   3'- -UGGGaccUGAUGUUCGGGGACuCGCa -5'
29027 3' -58.2 NC_006146.1 + 120120 0.67 0.796105
Target:  5'- cGCCCgagaUGGACUuu-AGCCCgCUcGAGCGc -3'
miRNA:   3'- -UGGG----ACCUGAuguUCGGG-GA-CUCGCa -5'
29027 3' -58.2 NC_006146.1 + 20592 0.67 0.796105
Target:  5'- cGCCCgggcgaGGACUACGAGUCCUUcaggcucaccggGGGCa- -3'
miRNA:   3'- -UGGGa-----CCUGAUGUUCGGGGA------------CUCGca -5'
29027 3' -58.2 NC_006146.1 + 23452 0.67 0.787119
Target:  5'- uGCCCgucucGGcCUACGAGgCCCUGGcCGUg -3'
miRNA:   3'- -UGGGa----CCuGAUGUUCgGGGACUcGCA- -5'
29027 3' -58.2 NC_006146.1 + 123967 0.67 0.787119
Target:  5'- cACCCUGuGGCUGgagacCGAGUCCCcGuGCGa -3'
miRNA:   3'- -UGGGAC-CUGAU-----GUUCGGGGaCuCGCa -5'
29027 3' -58.2 NC_006146.1 + 44265 0.67 0.787119
Target:  5'- uGCCC----CUGCGGGCCCCgGGGUGUg -3'
miRNA:   3'- -UGGGaccuGAUGUUCGGGGaCUCGCA- -5'
29027 3' -58.2 NC_006146.1 + 94026 0.67 0.787119
Target:  5'- gGCCCggcagGGGC-AC-GGCCCC-GAGCGc -3'
miRNA:   3'- -UGGGa----CCUGaUGuUCGGGGaCUCGCa -5'
29027 3' -58.2 NC_006146.1 + 42676 0.67 0.787119
Target:  5'- cGCCCgcggUGGGCUGCcugaggcuggcaGAGCCCCccAGCGc -3'
miRNA:   3'- -UGGG----ACCUGAUG------------UUCGGGGacUCGCa -5'
29027 3' -58.2 NC_006146.1 + 24663 0.67 0.777997
Target:  5'- cCCCUGGGCcuCAGGCCCUcc-GCGUc -3'
miRNA:   3'- uGGGACCUGauGUUCGGGGacuCGCA- -5'
29027 3' -58.2 NC_006146.1 + 12350 0.67 0.777997
Target:  5'- cCCCUGGGCcuCAGGCCCUcc-GCGUc -3'
miRNA:   3'- uGGGACCUGauGUUCGGGGacuCGCA- -5'
29027 3' -58.2 NC_006146.1 + 15429 0.67 0.777997
Target:  5'- cCCCUGGGCcuCAGGCCCUcc-GCGUc -3'
miRNA:   3'- uGGGACCUGauGUUCGGGGacuCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.