miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29027 3' -58.2 NC_006146.1 + 61898 1.07 0.002414
Target:  5'- cACCCUGGACUACAAGCCCCUGAGCGUg -3'
miRNA:   3'- -UGGGACCUGAUGUUCGGGGACUCGCA- -5'
29027 3' -58.2 NC_006146.1 + 47017 0.75 0.353839
Target:  5'- gGCCCggucGGACUcGCGGGCgCCCUGGGUGc -3'
miRNA:   3'- -UGGGa---CCUGA-UGUUCG-GGGACUCGCa -5'
29027 3' -58.2 NC_006146.1 + 39671 0.73 0.419667
Target:  5'- gGCCUUGGAggcgGCGGGCUCCUGGGCc- -3'
miRNA:   3'- -UGGGACCUga--UGUUCGGGGACUCGca -5'
29027 3' -58.2 NC_006146.1 + 54096 0.73 0.455244
Target:  5'- gUCCUGGACgcccuccacCAcGCCCUUGAGCGUc -3'
miRNA:   3'- uGGGACCUGau-------GUuCGGGGACUCGCA- -5'
29027 3' -58.2 NC_006146.1 + 14549 0.73 0.455244
Target:  5'- gGCCCUGGAgCUGCuGGGCCgCUuucgGGGCGUg -3'
miRNA:   3'- -UGGGACCU-GAUG-UUCGGgGA----CUCGCA- -5'
29027 3' -58.2 NC_006146.1 + 52457 0.72 0.482029
Target:  5'- cGCCCUGGAg-AgGGGCCucaucaacacgguCCUGAGCGUg -3'
miRNA:   3'- -UGGGACCUgaUgUUCGG-------------GGACUCGCA- -5'
29027 3' -58.2 NC_006146.1 + 123176 0.72 0.482966
Target:  5'- gGCCCcGGACgACGAGCUCC-GGGCGc -3'
miRNA:   3'- -UGGGaCCUGaUGUUCGGGGaCUCGCa -5'
29027 3' -58.2 NC_006146.1 + 42128 0.71 0.511476
Target:  5'- gGCCuCUGGcACgcCGuGUCCCUGAGCGUg -3'
miRNA:   3'- -UGG-GACC-UGauGUuCGGGGACUCGCA- -5'
29027 3' -58.2 NC_006146.1 + 142132 0.71 0.521136
Target:  5'- cCUCUGGACUAgGGGCCCUgggccccgaGGGCGg -3'
miRNA:   3'- uGGGACCUGAUgUUCGGGGa--------CUCGCa -5'
29027 3' -58.2 NC_006146.1 + 145210 0.71 0.521136
Target:  5'- cCUCUGGACUAgGGGCCCUgggccccgaGGGCGg -3'
miRNA:   3'- uGGGACCUGAUgUUCGGGGa--------CUCGCa -5'
29027 3' -58.2 NC_006146.1 + 148288 0.71 0.521136
Target:  5'- cCUCUGGACUAgGGGCCCUgggccccgaGGGCGg -3'
miRNA:   3'- uGGGACCUGAUgUUCGGGGa--------CUCGCa -5'
29027 3' -58.2 NC_006146.1 + 151366 0.71 0.521136
Target:  5'- cCUCUGGACUAgGGGCCCUgggccccgaGGGCGg -3'
miRNA:   3'- uGGGACCUGAUgUUCGGGGa--------CUCGCa -5'
29027 3' -58.2 NC_006146.1 + 154444 0.71 0.521136
Target:  5'- cCUCUGGACUAgGGGCCCUgggccccgaGGGCGg -3'
miRNA:   3'- uGGGACCUGAUgUUCGGGGa--------CUCGCa -5'
29027 3' -58.2 NC_006146.1 + 157522 0.71 0.521136
Target:  5'- cCUCUGGACUAgGGGCCCUgggccccgaGGGCGg -3'
miRNA:   3'- uGGGACCUGAUgUUCGGGGa--------CUCGCa -5'
29027 3' -58.2 NC_006146.1 + 62217 0.71 0.540661
Target:  5'- aGCCCUGcGCcGC-AGCCUCUGGGCGc -3'
miRNA:   3'- -UGGGACcUGaUGuUCGGGGACUCGCa -5'
29027 3' -58.2 NC_006146.1 + 130664 0.7 0.570382
Target:  5'- cACCCgaggucGGACUACAucccgGGCCCCUc-GCGUg -3'
miRNA:   3'- -UGGGa-----CCUGAUGU-----UCGGGGAcuCGCA- -5'
29027 3' -58.2 NC_006146.1 + 74835 0.7 0.570382
Target:  5'- aAUCCUGGugUGC-AGCCC-UGGGUGa -3'
miRNA:   3'- -UGGGACCugAUGuUCGGGgACUCGCa -5'
29027 3' -58.2 NC_006146.1 + 101973 0.7 0.607546
Target:  5'- cUCCUGGGCc-CAGGCCCCggucucguccauuuUGAGCGc -3'
miRNA:   3'- uGGGACCUGauGUUCGGGG--------------ACUCGCa -5'
29027 3' -58.2 NC_006146.1 + 145009 0.7 0.610575
Target:  5'- gGCCCUGGG----AGGCCCCUGuccGCGa -3'
miRNA:   3'- -UGGGACCUgaugUUCGGGGACu--CGCa -5'
29027 3' -58.2 NC_006146.1 + 141931 0.7 0.610575
Target:  5'- gGCCCUGGG----AGGCCCCUGuccGCGa -3'
miRNA:   3'- -UGGGACCUgaugUUCGGGGACu--CGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.