miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29027 3' -58.2 NC_006146.1 + 15429 0.67 0.777997
Target:  5'- cCCCUGGGCcuCAGGCCCUcc-GCGUc -3'
miRNA:   3'- uGGGACCUGauGUUCGGGGacuCGCA- -5'
29027 3' -58.2 NC_006146.1 + 27741 0.67 0.777997
Target:  5'- cCCCUGGGCcuCAGGCCCUcc-GCGUc -3'
miRNA:   3'- uGGGACCUGauGUUCGGGGacuCGCA- -5'
29027 3' -58.2 NC_006146.1 + 12350 0.67 0.777997
Target:  5'- cCCCUGGGCcuCAGGCCCUcc-GCGUc -3'
miRNA:   3'- uGGGACCUGauGUUCGGGGacuCGCA- -5'
29027 3' -58.2 NC_006146.1 + 12783 0.67 0.777997
Target:  5'- -aCCUGGACgc--GGCCCUgcagGGGCGg -3'
miRNA:   3'- ugGGACCUGauguUCGGGGa---CUCGCa -5'
29027 3' -58.2 NC_006146.1 + 52901 0.67 0.768747
Target:  5'- aGCCCcgcaUGGuCUGCGuGGCCCCccggGGGCGc -3'
miRNA:   3'- -UGGG----ACCuGAUGU-UCGGGGa---CUCGCa -5'
29027 3' -58.2 NC_006146.1 + 72673 0.67 0.767816
Target:  5'- cGCCCUGcaccccGGCUACGccauGCCCCUGGaaaucacGCGa -3'
miRNA:   3'- -UGGGAC------CUGAUGUu---CGGGGACU-------CGCa -5'
29027 3' -58.2 NC_006146.1 + 137725 0.67 0.759379
Target:  5'- uGCCCgGGcCUACccgguucugGAGCUCCUGGGgGUc -3'
miRNA:   3'- -UGGGaCCuGAUG---------UUCGGGGACUCgCA- -5'
29027 3' -58.2 NC_006146.1 + 105696 0.67 0.759379
Target:  5'- cGCCC-GGGCUcccaGGGCCCCcaGAGCGc -3'
miRNA:   3'- -UGGGaCCUGAug--UUCGGGGa-CUCGCa -5'
29027 3' -58.2 NC_006146.1 + 116347 0.68 0.737429
Target:  5'- uGCCCacggugGGGCggagAUcggagaucucaaggAGGUCCCUGAGCGUg -3'
miRNA:   3'- -UGGGa-----CCUGa---UG--------------UUCGGGGACUCGCA- -5'
29027 3' -58.2 NC_006146.1 + 150021 0.68 0.730649
Target:  5'- gGCCUUGGcccGCUccaGCAucgugcGCCCCUGcAGCGUc -3'
miRNA:   3'- -UGGGACC---UGA---UGUu-----CGGGGAC-UCGCA- -5'
29027 3' -58.2 NC_006146.1 + 120279 0.68 0.729677
Target:  5'- cACCaagCUGGugUGCucgGAGCCCCUGGucaagauGCGg -3'
miRNA:   3'- -UGG---GACCugAUG---UUCGGGGACU-------CGCa -5'
29027 3' -58.2 NC_006146.1 + 130386 0.68 0.720894
Target:  5'- -aCCUGGACaGCAAGCCUCcGAGgCa- -3'
miRNA:   3'- ugGGACCUGaUGUUCGGGGaCUC-Gca -5'
29027 3' -58.2 NC_006146.1 + 127553 0.68 0.711065
Target:  5'- cCCCUgccacGGGCUGCGccugcuGgCCCUGGGCGg -3'
miRNA:   3'- uGGGA-----CCUGAUGUu-----CgGGGACUCGCa -5'
29027 3' -58.2 NC_006146.1 + 117010 0.68 0.70117
Target:  5'- gGCCCUGGACcuggGCuacGCCCUaacggGGGCGc -3'
miRNA:   3'- -UGGGACCUGa---UGuu-CGGGGa----CUCGCa -5'
29027 3' -58.2 NC_006146.1 + 55664 0.69 0.671179
Target:  5'- uCCCUGGGCcucuCAgcugGGCuCCCUGGGUGa -3'
miRNA:   3'- uGGGACCUGau--GU----UCG-GGGACUCGCa -5'
29027 3' -58.2 NC_006146.1 + 144219 0.69 0.651016
Target:  5'- gGCCCUagacaGGGCUgucugACAGGCCCgccaaCUGGGCGc -3'
miRNA:   3'- -UGGGA-----CCUGA-----UGUUCGGG-----GACUCGCa -5'
29027 3' -58.2 NC_006146.1 + 156531 0.69 0.651016
Target:  5'- gGCCCUagacaGGGCUgucugACAGGCCCgccaaCUGGGCGc -3'
miRNA:   3'- -UGGGA-----CCUGA-----UGUUCGGG-----GACUCGCa -5'
29027 3' -58.2 NC_006146.1 + 134224 0.69 0.651016
Target:  5'- cCCCuuagUGGACUGCAGGCCCaUGuAGCc- -3'
miRNA:   3'- uGGG----ACCUGAUGUUCGGGgAC-UCGca -5'
29027 3' -58.2 NC_006146.1 + 150375 0.69 0.651016
Target:  5'- gGCCCUagacaGGGCUgucugACAGGCCCgccaaCUGGGCGc -3'
miRNA:   3'- -UGGGA-----CCUGA-----UGUUCGGG-----GACUCGCa -5'
29027 3' -58.2 NC_006146.1 + 153453 0.69 0.651016
Target:  5'- gGCCCUagacaGGGCUgucugACAGGCCCgccaaCUGGGCGc -3'
miRNA:   3'- -UGGGA-----CCUGA-----UGUUCGGG-----GACUCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.