miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29027 3' -58.2 NC_006146.1 + 10924 0.67 0.796105
Target:  5'- gACCCca-ACUGCGGGCUCCUGcGCGc -3'
miRNA:   3'- -UGGGaccUGAUGUUCGGGGACuCGCa -5'
29027 3' -58.2 NC_006146.1 + 12350 0.67 0.777997
Target:  5'- cCCCUGGGCcuCAGGCCCUcc-GCGUc -3'
miRNA:   3'- uGGGACCUGauGUUCGGGGacuCGCA- -5'
29027 3' -58.2 NC_006146.1 + 12783 0.67 0.777997
Target:  5'- -aCCUGGACgc--GGCCCUgcagGGGCGg -3'
miRNA:   3'- ugGGACCUGauguUCGGGGa---CUCGCa -5'
29027 3' -58.2 NC_006146.1 + 14549 0.73 0.455244
Target:  5'- gGCCCUGGAgCUGCuGGGCCgCUuucgGGGCGUg -3'
miRNA:   3'- -UGGGACCU-GAUG-UUCGGgGA----CUCGCA- -5'
29027 3' -58.2 NC_006146.1 + 15429 0.67 0.777997
Target:  5'- cCCCUGGGCcuCAGGCCCUcc-GCGUc -3'
miRNA:   3'- uGGGACCUGauGUUCGGGGacuCGCA- -5'
29027 3' -58.2 NC_006146.1 + 18507 0.67 0.777997
Target:  5'- cCCCUGGGCcuCAGGCCCUcc-GCGUc -3'
miRNA:   3'- uGGGACCUGauGUUCGGGGacuCGCA- -5'
29027 3' -58.2 NC_006146.1 + 20592 0.67 0.796105
Target:  5'- cGCCCgggcgaGGACUACGAGUCCUUcaggcucaccggGGGCa- -3'
miRNA:   3'- -UGGGa-----CCUGAUGUUCGGGGA------------CUCGca -5'
29027 3' -58.2 NC_006146.1 + 21585 0.67 0.777997
Target:  5'- cCCCUGGGCcuCAGGCCCUcc-GCGUc -3'
miRNA:   3'- uGGGACCUGauGUUCGGGGacuCGCA- -5'
29027 3' -58.2 NC_006146.1 + 23452 0.67 0.787119
Target:  5'- uGCCCgucucGGcCUACGAGgCCCUGGcCGUg -3'
miRNA:   3'- -UGGGa----CCuGAUGUUCgGGGACUcGCA- -5'
29027 3' -58.2 NC_006146.1 + 24663 0.67 0.777997
Target:  5'- cCCCUGGGCcuCAGGCCCUcc-GCGUc -3'
miRNA:   3'- uGGGACCUGauGUUCGGGGacuCGCA- -5'
29027 3' -58.2 NC_006146.1 + 27741 0.67 0.777997
Target:  5'- cCCCUGGGCcuCAGGCCCUcc-GCGUc -3'
miRNA:   3'- uGGGACCUGauGUUCGGGGacuCGCA- -5'
29027 3' -58.2 NC_006146.1 + 39671 0.73 0.419667
Target:  5'- gGCCUUGGAggcgGCGGGCUCCUGGGCc- -3'
miRNA:   3'- -UGGGACCUga--UGUUCGGGGACUCGca -5'
29027 3' -58.2 NC_006146.1 + 40428 0.69 0.640908
Target:  5'- cACCCgGGGCgGCAgcGGCCCCguaGGCGg -3'
miRNA:   3'- -UGGGaCCUGaUGU--UCGGGGac-UCGCa -5'
29027 3' -58.2 NC_006146.1 + 42128 0.71 0.511476
Target:  5'- gGCCuCUGGcACgcCGuGUCCCUGAGCGUg -3'
miRNA:   3'- -UGG-GACC-UGauGUuCGGGGACUCGCA- -5'
29027 3' -58.2 NC_006146.1 + 42676 0.67 0.787119
Target:  5'- cGCCCgcggUGGGCUGCcugaggcuggcaGAGCCCCccAGCGc -3'
miRNA:   3'- -UGGG----ACCUGAUG------------UUCGGGGacUCGCa -5'
29027 3' -58.2 NC_006146.1 + 44265 0.67 0.787119
Target:  5'- uGCCC----CUGCGGGCCCCgGGGUGUg -3'
miRNA:   3'- -UGGGaccuGAUGUUCGGGGaCUCGCA- -5'
29027 3' -58.2 NC_006146.1 + 47017 0.75 0.353839
Target:  5'- gGCCCggucGGACUcGCGGGCgCCCUGGGUGc -3'
miRNA:   3'- -UGGGa---CCUGA-UGUUCG-GGGACUCGCa -5'
29027 3' -58.2 NC_006146.1 + 52457 0.72 0.482029
Target:  5'- cGCCCUGGAg-AgGGGCCucaucaacacgguCCUGAGCGUg -3'
miRNA:   3'- -UGGGACCUgaUgUUCGG-------------GGACUCGCA- -5'
29027 3' -58.2 NC_006146.1 + 52901 0.67 0.768747
Target:  5'- aGCCCcgcaUGGuCUGCGuGGCCCCccggGGGCGc -3'
miRNA:   3'- -UGGG----ACCuGAUGU-UCGGGGa---CUCGCa -5'
29027 3' -58.2 NC_006146.1 + 54096 0.73 0.455244
Target:  5'- gUCCUGGACgcccuccacCAcGCCCUUGAGCGUc -3'
miRNA:   3'- uGGGACCUGau-------GUuCGGGGACUCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.