miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29027 3' -58.2 NC_006146.1 + 61898 1.07 0.002414
Target:  5'- cACCCUGGACUACAAGCCCCUGAGCGUg -3'
miRNA:   3'- -UGGGACCUGAUGUUCGGGGACUCGCA- -5'
29027 3' -58.2 NC_006146.1 + 24663 0.67 0.777997
Target:  5'- cCCCUGGGCcuCAGGCCCUcc-GCGUc -3'
miRNA:   3'- uGGGACCUGauGUUCGGGGacuCGCA- -5'
29027 3' -58.2 NC_006146.1 + 94026 0.67 0.787119
Target:  5'- gGCCCggcagGGGC-AC-GGCCCC-GAGCGc -3'
miRNA:   3'- -UGGGa----CCUGaUGuUCGGGGaCUCGCa -5'
29027 3' -58.2 NC_006146.1 + 60368 0.66 0.830521
Target:  5'- cACUaaGGACUGCGGGUgCCUGaAGCu- -3'
miRNA:   3'- -UGGgaCCUGAUGUUCGgGGAC-UCGca -5'
29027 3' -58.2 NC_006146.1 + 130664 0.7 0.570382
Target:  5'- cACCCgaggucGGACUACAucccgGGCCCCUc-GCGUg -3'
miRNA:   3'- -UGGGa-----CCUGAUGU-----UCGGGGAcuCGCA- -5'
29027 3' -58.2 NC_006146.1 + 101176 0.69 0.630793
Target:  5'- -aCCUGGGCUGCcuGGCCCUUGAaacGCu- -3'
miRNA:   3'- ugGGACCUGAUGu-UCGGGGACU---CGca -5'
29027 3' -58.2 NC_006146.1 + 130386 0.68 0.720894
Target:  5'- -aCCUGGACaGCAAGCCUCcGAGgCa- -3'
miRNA:   3'- ugGGACCUGaUGUUCGGGGaCUC-Gca -5'
29027 3' -58.2 NC_006146.1 + 120279 0.68 0.729677
Target:  5'- cACCaagCUGGugUGCucgGAGCCCCUGGucaagauGCGg -3'
miRNA:   3'- -UGG---GACCugAUG---UUCGGGGACU-------CGCa -5'
29027 3' -58.2 NC_006146.1 + 137725 0.67 0.759379
Target:  5'- uGCCCgGGcCUACccgguucugGAGCUCCUGGGgGUc -3'
miRNA:   3'- -UGGGaCCuGAUG---------UUCGGGGACUCgCA- -5'
29027 3' -58.2 NC_006146.1 + 21585 0.67 0.777997
Target:  5'- cCCCUGGGCcuCAGGCCCUcc-GCGUc -3'
miRNA:   3'- uGGGACCUGauGUUCGGGGacuCGCA- -5'
29027 3' -58.2 NC_006146.1 + 12350 0.67 0.777997
Target:  5'- cCCCUGGGCcuCAGGCCCUcc-GCGUc -3'
miRNA:   3'- uGGGACCUGauGUUCGGGGacuCGCA- -5'
29027 3' -58.2 NC_006146.1 + 116347 0.68 0.737429
Target:  5'- uGCCCacggugGGGCggagAUcggagaucucaaggAGGUCCCUGAGCGUg -3'
miRNA:   3'- -UGGGa-----CCUGa---UG--------------UUCGGGGACUCGCA- -5'
29027 3' -58.2 NC_006146.1 + 47017 0.75 0.353839
Target:  5'- gGCCCggucGGACUcGCGGGCgCCCUGGGUGc -3'
miRNA:   3'- -UGGGa---CCUGA-UGUUCG-GGGACUCGCa -5'
29027 3' -58.2 NC_006146.1 + 15429 0.67 0.777997
Target:  5'- cCCCUGGGCcuCAGGCCCUcc-GCGUc -3'
miRNA:   3'- uGGGACCUGauGUUCGGGGacuCGCA- -5'
29027 3' -58.2 NC_006146.1 + 54096 0.73 0.455244
Target:  5'- gUCCUGGACgcccuccacCAcGCCCUUGAGCGUc -3'
miRNA:   3'- uGGGACCUGau-------GUuCGGGGACUCGCA- -5'
29027 3' -58.2 NC_006146.1 + 150021 0.68 0.730649
Target:  5'- gGCCUUGGcccGCUccaGCAucgugcGCCCCUGcAGCGUc -3'
miRNA:   3'- -UGGGACC---UGA---UGUu-----CGGGGAC-UCGCA- -5'
29027 3' -58.2 NC_006146.1 + 18507 0.67 0.777997
Target:  5'- cCCCUGGGCcuCAGGCCCUcc-GCGUc -3'
miRNA:   3'- uGGGACCUGauGUUCGGGGacuCGCA- -5'
29027 3' -58.2 NC_006146.1 + 27741 0.67 0.777997
Target:  5'- cCCCUGGGCcuCAGGCCCUcc-GCGUc -3'
miRNA:   3'- uGGGACCUGauGUUCGGGGacuCGCA- -5'
29027 3' -58.2 NC_006146.1 + 62217 0.71 0.540661
Target:  5'- aGCCCUGcGCcGC-AGCCUCUGGGCGc -3'
miRNA:   3'- -UGGGACcUGaUGuUCGGGGACUCGCa -5'
29027 3' -58.2 NC_006146.1 + 134224 0.69 0.651016
Target:  5'- cCCCuuagUGGACUGCAGGCCCaUGuAGCc- -3'
miRNA:   3'- uGGG----ACCUGAUGUUCGGGgAC-UCGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.