miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29027 5' -59.4 NC_006146.1 + 123587 0.66 0.817466
Target:  5'- gGAGGCCaUCAUccagGaGGCCCGGgagGAg-- -3'
miRNA:   3'- gCUCCGGaAGUG----C-CCGGGCCa--CUagu -5'
29027 5' -59.4 NC_006146.1 + 45049 0.66 0.817466
Target:  5'- -aGGGCC-UCGCGGGCCUuGGgcuUGAUg- -3'
miRNA:   3'- gcUCCGGaAGUGCCCGGG-CC---ACUAgu -5'
29027 5' -59.4 NC_006146.1 + 6171 0.66 0.817466
Target:  5'- uGAGGCCUgcggaCAuUGGGCCCuG-GAUUAg -3'
miRNA:   3'- gCUCCGGAa----GU-GCCCGGGcCaCUAGU- -5'
29027 5' -59.4 NC_006146.1 + 45133 0.66 0.809035
Target:  5'- cCGGGaGCCUugggcuUUGCGGGCUgGGUGGg-- -3'
miRNA:   3'- -GCUC-CGGA------AGUGCCCGGgCCACUagu -5'
29027 5' -59.4 NC_006146.1 + 98319 0.66 0.809035
Target:  5'- cCGuGGCCgucuggCACGGGgCCGG-GcgCGg -3'
miRNA:   3'- -GCuCCGGaa----GUGCCCgGGCCaCuaGU- -5'
29027 5' -59.4 NC_006146.1 + 110009 0.66 0.800454
Target:  5'- uGGGGCC-UCA-GGGCuCCGuccUGAUCAa -3'
miRNA:   3'- gCUCCGGaAGUgCCCG-GGCc--ACUAGU- -5'
29027 5' -59.4 NC_006146.1 + 145534 0.66 0.79173
Target:  5'- gGGcGGCCgccUugGGGCCCGGagucucggagGAUCGc -3'
miRNA:   3'- gCU-CCGGaa-GugCCCGGGCCa---------CUAGU- -5'
29027 5' -59.4 NC_006146.1 + 157845 0.66 0.79173
Target:  5'- gGGcGGCCgccUugGGGCCCGGagucucggagGAUCGc -3'
miRNA:   3'- gCU-CCGGaa-GugCCCGGGCCa---------CUAGU- -5'
29027 5' -59.4 NC_006146.1 + 25196 0.66 0.79173
Target:  5'- -cAGGCCgggUCuCGGGUCUGGgGGUCu -3'
miRNA:   3'- gcUCCGGa--AGuGCCCGGGCCaCUAGu -5'
29027 5' -59.4 NC_006146.1 + 170528 0.66 0.79173
Target:  5'- gCGGGGCCUgaGgGGGCgCGGcGAUUg -3'
miRNA:   3'- -GCUCCGGAagUgCCCGgGCCaCUAGu -5'
29027 5' -59.4 NC_006146.1 + 12885 0.66 0.79173
Target:  5'- -cAGGCCgggUCuCGGGUCUGGgGGUCu -3'
miRNA:   3'- gcUCCGGa--AGuGCCCGGGCCaCUAGu -5'
29027 5' -59.4 NC_006146.1 + 19040 0.66 0.79173
Target:  5'- -cAGGCCgggUCuCGGGUCUGGgGGUCu -3'
miRNA:   3'- gcUCCGGa--AGuGCCCGGGCCaCUAGu -5'
29027 5' -59.4 NC_006146.1 + 66267 0.66 0.79173
Target:  5'- gGGGGCagggucUCGCGGGUCCuccUGAUCAg -3'
miRNA:   3'- gCUCCGga----AGUGCCCGGGcc-ACUAGU- -5'
29027 5' -59.4 NC_006146.1 + 22118 0.66 0.79173
Target:  5'- -cAGGCCgggUCuCGGGUCUGGgGGUCu -3'
miRNA:   3'- gcUCCGGa--AGuGCCCGGGCCaCUAGu -5'
29027 5' -59.4 NC_006146.1 + 28274 0.66 0.79173
Target:  5'- -cAGGCCgggUCuCGGGUCUGGgGGUCu -3'
miRNA:   3'- gcUCCGGa--AGuGCCCGGGCCaCUAGu -5'
29027 5' -59.4 NC_006146.1 + 154767 0.66 0.79173
Target:  5'- gGGcGGCCgccUugGGGCCCGGagucucggagGAUCGc -3'
miRNA:   3'- gCU-CCGGaa-GugCCCGGGCCa---------CUAGU- -5'
29027 5' -59.4 NC_006146.1 + 148612 0.66 0.79173
Target:  5'- gGGcGGCCgccUugGGGCCCGGagucucggagGAUCGc -3'
miRNA:   3'- gCU-CCGGaa-GugCCCGGGCCa---------CUAGU- -5'
29027 5' -59.4 NC_006146.1 + 68934 0.66 0.79173
Target:  5'- cCGGGGCCU----GGGCCCaGGaGAUCu -3'
miRNA:   3'- -GCUCCGGAagugCCCGGG-CCaCUAGu -5'
29027 5' -59.4 NC_006146.1 + 142456 0.66 0.79173
Target:  5'- gGGcGGCCgccUugGGGCCCGGagucucggagGAUCGc -3'
miRNA:   3'- gCU-CCGGaa-GugCCCGGGCCa---------CUAGU- -5'
29027 5' -59.4 NC_006146.1 + 132982 0.66 0.79173
Target:  5'- gGGGGCgguggagacCGCGGGUgCGGUGAUUg -3'
miRNA:   3'- gCUCCGgaa------GUGCCCGgGCCACUAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.