Results 1 - 20 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29027 | 5' | -59.4 | NC_006146.1 | + | 61933 | 1.08 | 0.001829 |
Target: 5'- cCGAGGCCUUCACGGGCCCGGUGAUCAa -3' miRNA: 3'- -GCUCCGGAAGUGCCCGGGCCACUAGU- -5' |
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29027 | 5' | -59.4 | NC_006146.1 | + | 70834 | 0.77 | 0.233312 |
Target: 5'- uGGGGCCaagggccaaGCGGGCCCGGUGAg-- -3' miRNA: 3'- gCUCCGGaag------UGCCCGGGCCACUagu -5' |
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29027 | 5' | -59.4 | NC_006146.1 | + | 85478 | 0.75 | 0.335434 |
Target: 5'- -aGGGCCUUCAC-GGCCUGGcUGGUCu -3' miRNA: 3'- gcUCCGGAAGUGcCCGGGCC-ACUAGu -5' |
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29027 | 5' | -59.4 | NC_006146.1 | + | 109409 | 0.74 | 0.365587 |
Target: 5'- aGGGGCCUcCuCGGaGCCCuGGUGAUCc -3' miRNA: 3'- gCUCCGGAaGuGCC-CGGG-CCACUAGu -5' |
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29027 | 5' | -59.4 | NC_006146.1 | + | 168115 | 0.74 | 0.373411 |
Target: 5'- gGAGGCCggCGCGcGCCCGG-GGUCc -3' miRNA: 3'- gCUCCGGaaGUGCcCGGGCCaCUAGu -5' |
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29027 | 5' | -59.4 | NC_006146.1 | + | 169979 | 0.74 | 0.373411 |
Target: 5'- gGAGGCCggCGCGcGCCCGG-GGUCc -3' miRNA: 3'- gCUCCGGaaGUGCcCGGGCCaCUAGu -5' |
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29027 | 5' | -59.4 | NC_006146.1 | + | 169047 | 0.74 | 0.373411 |
Target: 5'- gGAGGCCggCGCGcGCCCGG-GGUCc -3' miRNA: 3'- gCUCCGGaaGUGCcCGGGCCaCUAGu -5' |
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29027 | 5' | -59.4 | NC_006146.1 | + | 167183 | 0.74 | 0.373411 |
Target: 5'- gGAGGCCggCGCGcGCCCGG-GGUCc -3' miRNA: 3'- gCUCCGGaaGUGCcCGGGCCaCUAGu -5' |
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29027 | 5' | -59.4 | NC_006146.1 | + | 113653 | 0.73 | 0.389398 |
Target: 5'- gGAuGGCCUUgcugacCACGGGCCCguggaccaccguGGUGAUCu -3' miRNA: 3'- gCU-CCGGAA------GUGCCCGGG------------CCACUAGu -5' |
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29027 | 5' | -59.4 | NC_006146.1 | + | 146766 | 0.73 | 0.422685 |
Target: 5'- aGAGGCCgagUCACGcgacagguacaGGCCCGGUGc--- -3' miRNA: 3'- gCUCCGGa--AGUGC-----------CCGGGCCACuagu -5' |
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29027 | 5' | -59.4 | NC_006146.1 | + | 169284 | 0.72 | 0.466597 |
Target: 5'- gGGGGCCagCGCGGGguCCCGGggcggggGGUCGg -3' miRNA: 3'- gCUCCGGaaGUGCCC--GGGCCa------CUAGU- -5' |
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29027 | 5' | -59.4 | NC_006146.1 | + | 168352 | 0.72 | 0.466597 |
Target: 5'- gGGGGCCagCGCGGGguCCCGGggcggggGGUCGg -3' miRNA: 3'- gCUCCGGaaGUGCCC--GGGCCa------CUAGU- -5' |
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29027 | 5' | -59.4 | NC_006146.1 | + | 167420 | 0.72 | 0.466597 |
Target: 5'- gGGGGCCagCGCGGGguCCCGGggcggggGGUCGg -3' miRNA: 3'- gCUCCGGaaGUGCCC--GGGCCa------CUAGU- -5' |
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29027 | 5' | -59.4 | NC_006146.1 | + | 170215 | 0.72 | 0.466597 |
Target: 5'- gGGGGCCagCGCGGGguCCCGGggcggggGGUCGg -3' miRNA: 3'- gCUCCGGaaGUGCCC--GGGCCa------CUAGU- -5' |
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29027 | 5' | -59.4 | NC_006146.1 | + | 72343 | 0.72 | 0.484814 |
Target: 5'- uGAGGCCUUCGCuuGGGCCCuGGa----- -3' miRNA: 3'- gCUCCGGAAGUG--CCCGGG-CCacuagu -5' |
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29027 | 5' | -59.4 | NC_006146.1 | + | 50713 | 0.71 | 0.512752 |
Target: 5'- aGAGGCCgggUCAUagacgaGGGCCCGGUcGGg-- -3' miRNA: 3'- gCUCCGGa--AGUG------CCCGGGCCA-CUagu -5' |
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29027 | 5' | -59.4 | NC_006146.1 | + | 59243 | 0.7 | 0.570422 |
Target: 5'- --uGGCCUcCAUGGGCCUgGGUGuUCAg -3' miRNA: 3'- gcuCCGGAaGUGCCCGGG-CCACuAGU- -5' |
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29027 | 5' | -59.4 | NC_006146.1 | + | 127589 | 0.7 | 0.590029 |
Target: 5'- cCGAGGCCg-CGCcGGCCgGGUGAg-- -3' miRNA: 3'- -GCUCCGGaaGUGcCCGGgCCACUagu -5' |
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29027 | 5' | -59.4 | NC_006146.1 | + | 57238 | 0.7 | 0.599878 |
Target: 5'- aCGGuGGUC--CACGGGCCC-GUGGUCAg -3' miRNA: 3'- -GCU-CCGGaaGUGCCCGGGcCACUAGU- -5' |
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29027 | 5' | -59.4 | NC_006146.1 | + | 122517 | 0.69 | 0.619637 |
Target: 5'- gGAGGCC---GCGGaGCCCgGGUGGUUc -3' miRNA: 3'- gCUCCGGaagUGCC-CGGG-CCACUAGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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