miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29027 5' -59.4 NC_006146.1 + 148511 0.66 0.782872
Target:  5'- -cAGGCCgggUCuuGGGCCUGGgaGGUCc -3'
miRNA:   3'- gcUCCGGa--AGugCCCGGGCCa-CUAGu -5'
29027 5' -59.4 NC_006146.1 + 137976 0.66 0.782872
Target:  5'- -cGGGCCUccCGgGGGCCCGGcggGGUgGg -3'
miRNA:   3'- gcUCCGGAa-GUgCCCGGGCCa--CUAgU- -5'
29027 5' -59.4 NC_006146.1 + 145433 0.66 0.782872
Target:  5'- -cAGGCCgggUCuuGGGCCUGGgaGGUCc -3'
miRNA:   3'- gcUCCGGa--AGugCCCGGGCCa-CUAGu -5'
29027 5' -59.4 NC_006146.1 + 157744 0.66 0.782872
Target:  5'- -cAGGCCgggUCuuGGGCCUGGgaGGUCc -3'
miRNA:   3'- gcUCCGGa--AGugCCCGGGCCa-CUAGu -5'
29027 5' -59.4 NC_006146.1 + 142355 0.66 0.782872
Target:  5'- -cAGGCCgggUCuuGGGCCUGGgaGGUCc -3'
miRNA:   3'- gcUCCGGa--AGugCCCGGGCCa-CUAGu -5'
29027 5' -59.4 NC_006146.1 + 151589 0.66 0.782872
Target:  5'- -cAGGCCgggUCuuGGGCCUGGgaGGUCc -3'
miRNA:   3'- gcUCCGGa--AGugCCCGGGCCa-CUAGu -5'
29027 5' -59.4 NC_006146.1 + 132713 0.67 0.773888
Target:  5'- -uGGGcCCUUCACGauGCCCGGUG-UCc -3'
miRNA:   3'- gcUCC-GGAAGUGCc-CGGGCCACuAGu -5'
29027 5' -59.4 NC_006146.1 + 115352 0.67 0.773888
Target:  5'- uCGAGGCCUUC-CuGGCCgGcGUGG-CGg -3'
miRNA:   3'- -GCUCCGGAAGuGcCCGGgC-CACUaGU- -5'
29027 5' -59.4 NC_006146.1 + 160666 0.67 0.764785
Target:  5'- gGAGGCCUUCA-GGG-CCGGcacaUGAcCAg -3'
miRNA:   3'- gCUCCGGAAGUgCCCgGGCC----ACUaGU- -5'
29027 5' -59.4 NC_006146.1 + 99823 0.67 0.764785
Target:  5'- gGGGGUgUUCG-GGGCCuCGGUGGa-- -3'
miRNA:   3'- gCUCCGgAAGUgCCCGG-GCCACUagu -5'
29027 5' -59.4 NC_006146.1 + 34064 0.67 0.764785
Target:  5'- gGGGGUCccguggCACGGGgCCGGgGGUCc -3'
miRNA:   3'- gCUCCGGaa----GUGCCCgGGCCaCUAGu -5'
29027 5' -59.4 NC_006146.1 + 23780 0.67 0.764785
Target:  5'- uGGcGGCCUgcgcgUCugGGGCCCGcUGAg-- -3'
miRNA:   3'- gCU-CCGGA-----AGugCCCGGGCcACUagu -5'
29027 5' -59.4 NC_006146.1 + 167641 0.67 0.763868
Target:  5'- gCGGGGCCcggCGCgugccggGGGCCCGG-GggCGu -3'
miRNA:   3'- -GCUCCGGaa-GUG-------CCCGGGCCaCuaGU- -5'
29027 5' -59.4 NC_006146.1 + 128761 0.67 0.755571
Target:  5'- cCGAGGCCUUCuucuggagugugGCcagcaGGGCCgaaGcGUGAUCGg -3'
miRNA:   3'- -GCUCCGGAAG------------UG-----CCCGGg--C-CACUAGU- -5'
29027 5' -59.4 NC_006146.1 + 137397 0.67 0.746256
Target:  5'- gGAGGCCgggagggugCugGGGuCCCGGgGAcCAc -3'
miRNA:   3'- gCUCCGGaa-------GugCCC-GGGCCaCUaGU- -5'
29027 5' -59.4 NC_006146.1 + 53361 0.67 0.746256
Target:  5'- uGAGGUCUUgGCuGGCCCGGcgcuUGcUCGc -3'
miRNA:   3'- gCUCCGGAAgUGcCCGGGCC----ACuAGU- -5'
29027 5' -59.4 NC_006146.1 + 99002 0.67 0.746256
Target:  5'- aGAGGCCgcgCGCaggaGGGUCCGcGUGAc-- -3'
miRNA:   3'- gCUCCGGaa-GUG----CCCGGGC-CACUagu -5'
29027 5' -59.4 NC_006146.1 + 139441 0.67 0.736847
Target:  5'- aGaAGGCCccCACGGuGCCCGGgggGGUg- -3'
miRNA:   3'- gC-UCCGGaaGUGCC-CGGGCCa--CUAgu -5'
29027 5' -59.4 NC_006146.1 + 88339 0.67 0.736847
Target:  5'- gGAGGCCgu--UGGGCCCaGGgGGUUAa -3'
miRNA:   3'- gCUCCGGaaguGCCCGGG-CCaCUAGU- -5'
29027 5' -59.4 NC_006146.1 + 39042 0.68 0.717782
Target:  5'- gGGGGCCagcaggCAgGGGCCCuGUGAa-- -3'
miRNA:   3'- gCUCCGGaa----GUgCCCGGGcCACUagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.