miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29027 5' -59.4 NC_006146.1 + 6171 0.66 0.817466
Target:  5'- uGAGGCCUgcggaCAuUGGGCCCuG-GAUUAg -3'
miRNA:   3'- gCUCCGGAa----GU-GCCCGGGcCaCUAGU- -5'
29027 5' -59.4 NC_006146.1 + 12885 0.66 0.79173
Target:  5'- -cAGGCCgggUCuCGGGUCUGGgGGUCu -3'
miRNA:   3'- gcUCCGGa--AGuGCCCGGGCCaCUAGu -5'
29027 5' -59.4 NC_006146.1 + 19040 0.66 0.79173
Target:  5'- -cAGGCCgggUCuCGGGUCUGGgGGUCu -3'
miRNA:   3'- gcUCCGGa--AGuGCCCGGGCCaCUAGu -5'
29027 5' -59.4 NC_006146.1 + 22118 0.66 0.79173
Target:  5'- -cAGGCCgggUCuCGGGUCUGGgGGUCu -3'
miRNA:   3'- gcUCCGGa--AGuGCCCGGGCCaCUAGu -5'
29027 5' -59.4 NC_006146.1 + 23780 0.67 0.764785
Target:  5'- uGGcGGCCUgcgcgUCugGGGCCCGcUGAg-- -3'
miRNA:   3'- gCU-CCGGA-----AGugCCCGGGCcACUagu -5'
29027 5' -59.4 NC_006146.1 + 25196 0.66 0.79173
Target:  5'- -cAGGCCgggUCuCGGGUCUGGgGGUCu -3'
miRNA:   3'- gcUCCGGa--AGuGCCCGGGCCaCUAGu -5'
29027 5' -59.4 NC_006146.1 + 28274 0.66 0.79173
Target:  5'- -cAGGCCgggUCuCGGGUCUGGgGGUCu -3'
miRNA:   3'- gcUCCGGa--AGuGCCCGGGCCaCUAGu -5'
29027 5' -59.4 NC_006146.1 + 34064 0.67 0.764785
Target:  5'- gGGGGUCccguggCACGGGgCCGGgGGUCc -3'
miRNA:   3'- gCUCCGGaa----GUGCCCgGGCCaCUAGu -5'
29027 5' -59.4 NC_006146.1 + 39042 0.68 0.717782
Target:  5'- gGGGGCCagcaggCAgGGGCCCuGUGAa-- -3'
miRNA:   3'- gCUCCGGaa----GUgCCCGGGcCACUagu -5'
29027 5' -59.4 NC_006146.1 + 39308 0.68 0.669064
Target:  5'- aGAGGCCUgugUACuGGGCUCGGcUGGc-- -3'
miRNA:   3'- gCUCCGGAa--GUG-CCCGGGCC-ACUagu -5'
29027 5' -59.4 NC_006146.1 + 41612 0.68 0.688691
Target:  5'- gGGGGCUggucCGCuGGGCCCGG-GcgCAg -3'
miRNA:   3'- gCUCCGGaa--GUG-CCCGGGCCaCuaGU- -5'
29027 5' -59.4 NC_006146.1 + 45049 0.66 0.817466
Target:  5'- -aGGGCC-UCGCGGGCCUuGGgcuUGAUg- -3'
miRNA:   3'- gcUCCGGaAGUGCCCGGG-CC---ACUAgu -5'
29027 5' -59.4 NC_006146.1 + 45133 0.66 0.809035
Target:  5'- cCGGGaGCCUugggcuUUGCGGGCUgGGUGGg-- -3'
miRNA:   3'- -GCUC-CGGA------AGUGCCCGGgCCACUagu -5'
29027 5' -59.4 NC_006146.1 + 50713 0.71 0.512752
Target:  5'- aGAGGCCgggUCAUagacgaGGGCCCGGUcGGg-- -3'
miRNA:   3'- gCUCCGGa--AGUG------CCCGGGCCA-CUagu -5'
29027 5' -59.4 NC_006146.1 + 51221 0.69 0.649324
Target:  5'- aCGAGGCCggggUgGCGGGUgaggUUGGUGAUg- -3'
miRNA:   3'- -GCUCCGGa---AgUGCCCG----GGCCACUAgu -5'
29027 5' -59.4 NC_006146.1 + 53361 0.67 0.746256
Target:  5'- uGAGGUCUUgGCuGGCCCGGcgcuUGcUCGc -3'
miRNA:   3'- gCUCCGGAAgUGcCCGGGCC----ACuAGU- -5'
29027 5' -59.4 NC_006146.1 + 53553 0.68 0.717782
Target:  5'- aGGGG-CUUCugGGGgugaCGGUGAUCu -3'
miRNA:   3'- gCUCCgGAAGugCCCgg--GCCACUAGu -5'
29027 5' -59.4 NC_006146.1 + 56758 0.68 0.705239
Target:  5'- cCGGGGCCUgaUCGCGGaGCacgcgcaggccuccUCGGUGAgcgCGg -3'
miRNA:   3'- -GCUCCGGA--AGUGCC-CG--------------GGCCACUa--GU- -5'
29027 5' -59.4 NC_006146.1 + 57238 0.7 0.599878
Target:  5'- aCGGuGGUC--CACGGGCCC-GUGGUCAg -3'
miRNA:   3'- -GCU-CCGGaaGUGCCCGGGcCACUAGU- -5'
29027 5' -59.4 NC_006146.1 + 59243 0.7 0.570422
Target:  5'- --uGGCCUcCAUGGGCCUgGGUGuUCAg -3'
miRNA:   3'- gcuCCGGAaGUGCCCGGG-CCACuAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.