miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29027 5' -59.4 NC_006146.1 + 61933 1.08 0.001829
Target:  5'- cCGAGGCCUUCACGGGCCCGGUGAUCAa -3'
miRNA:   3'- -GCUCCGGAAGUGCCCGGGCCACUAGU- -5'
29027 5' -59.4 NC_006146.1 + 146631 0.68 0.669064
Target:  5'- --cGGCCagggUCACGaGGCCUGGguccaUGGUCAg -3'
miRNA:   3'- gcuCCGGa---AGUGC-CCGGGCC-----ACUAGU- -5'
29027 5' -59.4 NC_006146.1 + 99040 0.68 0.688691
Target:  5'- aGAGGCCccccaGGGCCCGGcgGGUg- -3'
miRNA:   3'- gCUCCGGaagugCCCGGGCCa-CUAgu -5'
29027 5' -59.4 NC_006146.1 + 6171 0.66 0.817466
Target:  5'- uGAGGCCUgcggaCAuUGGGCCCuG-GAUUAg -3'
miRNA:   3'- gCUCCGGAa----GU-GCCCGGGcCaCUAGU- -5'
29027 5' -59.4 NC_006146.1 + 168115 0.74 0.373411
Target:  5'- gGAGGCCggCGCGcGCCCGG-GGUCc -3'
miRNA:   3'- gCUCCGGaaGUGCcCGGGCCaCUAGu -5'
29027 5' -59.4 NC_006146.1 + 169047 0.74 0.373411
Target:  5'- gGAGGCCggCGCGcGCCCGG-GGUCc -3'
miRNA:   3'- gCUCCGGaaGUGCcCGGGCCaCUAGu -5'
29027 5' -59.4 NC_006146.1 + 146766 0.73 0.422685
Target:  5'- aGAGGCCgagUCACGcgacagguacaGGCCCGGUGc--- -3'
miRNA:   3'- gCUCCGGa--AGUGC-----------CCGGGCCACuagu -5'
29027 5' -59.4 NC_006146.1 + 167420 0.72 0.466597
Target:  5'- gGGGGCCagCGCGGGguCCCGGggcggggGGUCGg -3'
miRNA:   3'- gCUCCGGaaGUGCCC--GGGCCa------CUAGU- -5'
29027 5' -59.4 NC_006146.1 + 170215 0.72 0.466597
Target:  5'- gGGGGCCagCGCGGGguCCCGGggcggggGGUCGg -3'
miRNA:   3'- gCUCCGGaaGUGCCC--GGGCCa------CUAGU- -5'
29027 5' -59.4 NC_006146.1 + 39308 0.68 0.669064
Target:  5'- aGAGGCCUgugUACuGGGCUCGGcUGGc-- -3'
miRNA:   3'- gCUCCGGAa--GUG-CCCGGGCC-ACUagu -5'
29027 5' -59.4 NC_006146.1 + 59243 0.7 0.570422
Target:  5'- --uGGCCUcCAUGGGCCUgGGUGuUCAg -3'
miRNA:   3'- gcuCCGGAaGUGCCCGGG-CCACuAGU- -5'
29027 5' -59.4 NC_006146.1 + 169284 0.72 0.466597
Target:  5'- gGGGGCCagCGCGGGguCCCGGggcggggGGUCGg -3'
miRNA:   3'- gCUCCGGaaGUGCCC--GGGCCa------CUAGU- -5'
29027 5' -59.4 NC_006146.1 + 70834 0.77 0.233312
Target:  5'- uGGGGCCaagggccaaGCGGGCCCGGUGAg-- -3'
miRNA:   3'- gCUCCGGaag------UGCCCGGGCCACUagu -5'
29027 5' -59.4 NC_006146.1 + 57238 0.7 0.599878
Target:  5'- aCGGuGGUC--CACGGGCCC-GUGGUCAg -3'
miRNA:   3'- -GCU-CCGGaaGUGCCCGGGcCACUAGU- -5'
29027 5' -59.4 NC_006146.1 + 85478 0.75 0.335434
Target:  5'- -aGGGCCUUCAC-GGCCUGGcUGGUCu -3'
miRNA:   3'- gcUCCGGAAGUGcCCGGGCC-ACUAGu -5'
29027 5' -59.4 NC_006146.1 + 168352 0.72 0.466597
Target:  5'- gGGGGCCagCGCGGGguCCCGGggcggggGGUCGg -3'
miRNA:   3'- gCUCCGGaaGUGCCC--GGGCCa------CUAGU- -5'
29027 5' -59.4 NC_006146.1 + 61420 0.68 0.669064
Target:  5'- gCGGuGGCCaaCGCGGGCacggCCGGgcUGAUCAg -3'
miRNA:   3'- -GCU-CCGGaaGUGCCCG----GGCC--ACUAGU- -5'
29027 5' -59.4 NC_006146.1 + 103310 0.68 0.673001
Target:  5'- gGAGGCCaaacgcCACGGGCCCcccaaaguaaugauuGGUGGa-- -3'
miRNA:   3'- gCUCCGGaa----GUGCCCGGG---------------CCACUagu -5'
29027 5' -59.4 NC_006146.1 + 167183 0.74 0.373411
Target:  5'- gGAGGCCggCGCGcGCCCGG-GGUCc -3'
miRNA:   3'- gCUCCGGaaGUGCcCGGGCCaCUAGu -5'
29027 5' -59.4 NC_006146.1 + 169979 0.74 0.373411
Target:  5'- gGAGGCCggCGCGcGCCCGG-GGUCc -3'
miRNA:   3'- gCUCCGGaaGUGCcCGGGCCaCUAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.