miRNA display CGI


Results 21 - 40 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29028 5' -56.5 NC_006146.1 + 167744 0.67 0.881371
Target:  5'- gGGGCGCGGcGAUU--GUCGcCGCCCUc -3'
miRNA:   3'- aCCCGCGUC-UUGAggUAGUuGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 167619 0.66 0.888225
Target:  5'- cGGGgGCGGAggggggGgUCCcgCGGgGCCCg -3'
miRNA:   3'- aCCCgCGUCU------UgAGGuaGUUgCGGGg -5'
29028 5' -56.5 NC_006146.1 + 167510 0.75 0.442548
Target:  5'- aGGGgGCAGGGCUggcgCCGggCcGCGCCCCc -3'
miRNA:   3'- aCCCgCGUCUUGA----GGUa-GuUGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 167323 0.69 0.74644
Target:  5'- gGGGCcgGCGGGGCgucCCGUCGucACGCUCg -3'
miRNA:   3'- aCCCG--CGUCUUGa--GGUAGU--UGCGGGg -5'
29028 5' -56.5 NC_006146.1 + 166894 0.71 0.647211
Target:  5'- gGGGCaaAGGccGCgUUCAUCAGCGCCUCg -3'
miRNA:   3'- aCCCGcgUCU--UG-AGGUAGUUGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 165818 0.67 0.843948
Target:  5'- gGGGCGUcccuggccgcguGGAcgcCUCCAaCGGCcaGCCCCg -3'
miRNA:   3'- aCCCGCG------------UCUu--GAGGUaGUUG--CGGGG- -5'
29028 5' -56.5 NC_006146.1 + 163133 0.66 0.919113
Target:  5'- aGGGCGCAGAGCacgaCCAggCAGauUCUCa -3'
miRNA:   3'- aCCCGCGUCUUGa---GGUa-GUUgcGGGG- -5'
29028 5' -56.5 NC_006146.1 + 162379 0.68 0.827617
Target:  5'- aGGGUGCAGGACgggggCuuUGCCCUg -3'
miRNA:   3'- aCCCGCGUCUUGagguaGuuGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 161729 0.68 0.826782
Target:  5'- uUGGGgGUggguggcacggugGGAGCccgCCGUCcccgaaagaggcAACGCCCCg -3'
miRNA:   3'- -ACCCgCG-------------UCUUGa--GGUAG------------UUGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 161443 0.67 0.851835
Target:  5'- aGGGCGCGGAcC-CC----GCGCCCa -3'
miRNA:   3'- aCCCGCGUCUuGaGGuaguUGCGGGg -5'
29028 5' -56.5 NC_006146.1 + 160435 0.69 0.774698
Target:  5'- gUGGGCGguGGcCcCCAUCAcgaaggcgGCGCUCUc -3'
miRNA:   3'- -ACCCGCguCUuGaGGUAGU--------UGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 160143 0.69 0.774698
Target:  5'- aGGGgGUAGAAgUagauguagCCG-CAugGCCCCg -3'
miRNA:   3'- aCCCgCGUCUUgA--------GGUaGUugCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 159880 0.68 0.827617
Target:  5'- aGGucGCGCGGGAgaccccCUCCGUCAAagaaGaCCCCc -3'
miRNA:   3'- aCC--CGCGUCUU------GAGGUAGUUg---C-GGGG- -5'
29028 5' -56.5 NC_006146.1 + 159705 0.67 0.8743
Target:  5'- aGGG-GCAGGguuucggugGCUUCAUgGugGCgCCCg -3'
miRNA:   3'- aCCCgCGUCU---------UGAGGUAgUugCG-GGG- -5'
29028 5' -56.5 NC_006146.1 + 159447 0.69 0.78388
Target:  5'- cGaGGCGgGGAACUCCuUgAGgGCCgCCa -3'
miRNA:   3'- aC-CCGCgUCUUGAGGuAgUUgCGG-GG- -5'
29028 5' -56.5 NC_006146.1 + 156742 0.67 0.881371
Target:  5'- -uGGCGCAGAcgcucaGCUCCAcggcCAGCGCguacaCCu -3'
miRNA:   3'- acCCGCGUCU------UGAGGUa---GUUGCGg----GG- -5'
29028 5' -56.5 NC_006146.1 + 156622 0.66 0.919113
Target:  5'- aGGGCGCuGcACgcgCgGUCAuucuguCGCCUCa -3'
miRNA:   3'- aCCCGCGuCuUGa--GgUAGUu-----GCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 156320 0.68 0.819187
Target:  5'- aGaGGCGCGGG--UCCGggauggggcUC-ACGCCCCg -3'
miRNA:   3'- aC-CCGCGUCUugAGGU---------AGuUGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 156265 0.7 0.727095
Target:  5'- uUGGGCaGCAccauGAGCUCCcccacgCAGCGCCa- -3'
miRNA:   3'- -ACCCG-CGU----CUUGAGGua----GUUGCGGgg -5'
29028 5' -56.5 NC_006146.1 + 155513 0.68 0.835874
Target:  5'- -uGGCGUAGGuacuGCUCCuugcgcuUCAGCGCgUCCg -3'
miRNA:   3'- acCCGCGUCU----UGAGGu------AGUUGCG-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.