miRNA display CGI


Results 21 - 40 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29028 5' -56.5 NC_006146.1 + 118027 0.66 0.901266
Target:  5'- gGGGCGCGcGAGgaCCA-CGGaccuggaGCCCCc -3'
miRNA:   3'- aCCCGCGU-CUUgaGGUaGUUg------CGGGG- -5'
29028 5' -56.5 NC_006146.1 + 123114 0.66 0.901266
Target:  5'- gUGGGCGCuagacGGGGCUUUca-GACGgCCCu -3'
miRNA:   3'- -ACCCGCG-----UCUUGAGGuagUUGCgGGG- -5'
29028 5' -56.5 NC_006146.1 + 84171 0.66 0.901266
Target:  5'- cGGGCcgagaaugccgGUAGcgaugcuuGCUCCAUCgcgUGCCCCa -3'
miRNA:   3'- aCCCG-----------CGUCu-------UGAGGUAGuu-GCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 53893 0.66 0.901266
Target:  5'- aGGGCGUAGcccAGgUCCAgggccCGCUCCa -3'
miRNA:   3'- aCCCGCGUC---UUgAGGUaguu-GCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 146678 0.66 0.901266
Target:  5'- cGGGCGguGGGCggCCccg---GCCCCa -3'
miRNA:   3'- aCCCGCguCUUGa-GGuaguugCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 2345 0.66 0.900635
Target:  5'- cGGGCcccGCGGGACcccccccUCCGccccCGAgGCCCCc -3'
miRNA:   3'- aCCCG---CGUCUUG-------AGGUa---GUUgCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 1413 0.66 0.900635
Target:  5'- cGGGCcccGCGGGACcccccccUCCGccccCGAgGCCCCc -3'
miRNA:   3'- aCCCG---CGUCUUG-------AGGUa---GUUgCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 3277 0.66 0.900635
Target:  5'- cGGGCcccGCGGGACcccccccUCCGccccCGAgGCCCCc -3'
miRNA:   3'- aCCCG---CGUCUUG-------AGGUa---GUUgCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 482 0.66 0.900635
Target:  5'- cGGGCcccGCGGGACcccccccUCCGccccCGAgGCCCCc -3'
miRNA:   3'- aCCCG---CGUCUUG-------AGGUa---GUUgCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 98242 0.66 0.894858
Target:  5'- gGGGUGCAGGGCggaCAgc-ACGUCCa -3'
miRNA:   3'- aCCCGCGUCUUGag-GUaguUGCGGGg -5'
29028 5' -56.5 NC_006146.1 + 6439 0.66 0.894858
Target:  5'- gUGGGCcCuGGGgUCCAUgGG-GCCCCa -3'
miRNA:   3'- -ACCCGcGuCUUgAGGUAgUUgCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 48816 0.66 0.894858
Target:  5'- uUGGGgGC-GGugUCCAgaaaggccuUCAGCuGCUCCu -3'
miRNA:   3'- -ACCCgCGuCUugAGGU---------AGUUG-CGGGG- -5'
29028 5' -56.5 NC_006146.1 + 19217 0.66 0.894205
Target:  5'- aGGGC-CuGGACguggaguuugccgUCC-UCAACGCCCUc -3'
miRNA:   3'- aCCCGcGuCUUG-------------AGGuAGUUGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 136340 0.66 0.894205
Target:  5'- gGGGCGCAGAACcucccccUCCugguUUAAC-CCUa -3'
miRNA:   3'- aCCCGCGUCUUG-------AGGu---AGUUGcGGGg -5'
29028 5' -56.5 NC_006146.1 + 167859 0.66 0.890905
Target:  5'- gUGGGCGCucagaucggcgcgggGGAGCcCCGg-GGCGgCCCg -3'
miRNA:   3'- -ACCCGCG---------------UCUUGaGGUagUUGCgGGG- -5'
29028 5' -56.5 NC_006146.1 + 169723 0.66 0.890905
Target:  5'- gUGGGCGCucagaucggcgcgggGGAGCcCCGg-GGCGgCCCg -3'
miRNA:   3'- -ACCCGCG---------------UCUUGaGGUagUUGCgGGG- -5'
29028 5' -56.5 NC_006146.1 + 168791 0.66 0.890905
Target:  5'- gUGGGCGCucagaucggcgcgggGGAGCcCCGg-GGCGgCCCg -3'
miRNA:   3'- -ACCCGCG---------------UCUUGaGGUagUUGCgGGG- -5'
29028 5' -56.5 NC_006146.1 + 130044 0.66 0.888225
Target:  5'- cGGaccGCGagcCGGGcCUCCAagAGCGCCCCc -3'
miRNA:   3'- aCC---CGC---GUCUuGAGGUagUUGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 151674 0.66 0.888225
Target:  5'- aGGGCGUugaGGAcggcaaACUCaCGUCcAgGCCCUg -3'
miRNA:   3'- aCCCGCG---UCU------UGAG-GUAGuUgCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 168551 0.66 0.888225
Target:  5'- cGGGgGCGGAggggggGgUCCcgCGGgGCCCg -3'
miRNA:   3'- aCCCgCGUCU------UgAGGuaGUUgCGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.