miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29029 3' -53.1 NC_006146.1 + 66477 1.11 0.004042
Target:  5'- cUGUCCACCUUGUAGGUAUGCGGCAGCc -3'
miRNA:   3'- -ACAGGUGGAACAUCCAUACGCCGUCG- -5'
29029 3' -53.1 NC_006146.1 + 119146 0.75 0.598023
Target:  5'- aGgCCACCUuuuacgcgUGUcGGGcUAUGCGGCGGCu -3'
miRNA:   3'- aCaGGUGGA--------ACA-UCC-AUACGCCGUCG- -5'
29029 3' -53.1 NC_006146.1 + 128145 0.74 0.691591
Target:  5'- -aUCCAaCUcGUAGGccgcguUGUGCGGCAGCa -3'
miRNA:   3'- acAGGUgGAaCAUCC------AUACGCCGUCG- -5'
29029 3' -53.1 NC_006146.1 + 56568 0.73 0.72218
Target:  5'- cGUCCACCUccGUcAGGg--GCGGCcgGGCg -3'
miRNA:   3'- aCAGGUGGAa-CA-UCCauaCGCCG--UCG- -5'
29029 3' -53.1 NC_006146.1 + 64168 0.71 0.808555
Target:  5'- aGUCUGCCagGcUGGGUG-GgGGCAGCa -3'
miRNA:   3'- aCAGGUGGaaC-AUCCAUaCgCCGUCG- -5'
29029 3' -53.1 NC_006146.1 + 4666 0.7 0.85911
Target:  5'- cGUCCuggGCCggGUGGGcgagGCGGgGGCa -3'
miRNA:   3'- aCAGG---UGGaaCAUCCaua-CGCCgUCG- -5'
29029 3' -53.1 NC_006146.1 + 109802 0.7 0.85911
Target:  5'- uUGUCUGCUUgaugcuagucaUGUAGGUGaGCgGGCAGUc -3'
miRNA:   3'- -ACAGGUGGA-----------ACAUCCAUaCG-CCGUCG- -5'
29029 3' -53.1 NC_006146.1 + 149035 0.7 0.874335
Target:  5'- -uUCC-CCUUGUGGGg--GUGGCucGGCu -3'
miRNA:   3'- acAGGuGGAACAUCCauaCGCCG--UCG- -5'
29029 3' -53.1 NC_006146.1 + 115921 0.69 0.914466
Target:  5'- cGgCCACCccggGUAcgggggcagcGGUAgcgGCGGCGGCg -3'
miRNA:   3'- aCaGGUGGaa--CAU----------CCAUa--CGCCGUCG- -5'
29029 3' -53.1 NC_006146.1 + 95381 0.68 0.920307
Target:  5'- aGUCCAUCgUGU-GGUGaa-GGCAGCu -3'
miRNA:   3'- aCAGGUGGaACAuCCAUacgCCGUCG- -5'
29029 3' -53.1 NC_006146.1 + 137903 0.68 0.920307
Target:  5'- -aUCCcCCgg--GGGUA-GCGGCGGCa -3'
miRNA:   3'- acAGGuGGaacaUCCAUaCGCCGUCG- -5'
29029 3' -53.1 NC_006146.1 + 90136 0.68 0.925899
Target:  5'- -cUCCauGCCUgGUGcGGUGUaCGGCAGCu -3'
miRNA:   3'- acAGG--UGGAaCAU-CCAUAcGCCGUCG- -5'
29029 3' -53.1 NC_006146.1 + 159930 0.68 0.931243
Target:  5'- cG-CCGCCUgcuuUAGGUGcacUGUGGCAGg -3'
miRNA:   3'- aCaGGUGGAac--AUCCAU---ACGCCGUCg -5'
29029 3' -53.1 NC_006146.1 + 48313 0.67 0.95015
Target:  5'- -cUCCACCgucggAGGUGcugGCGGUGGUg -3'
miRNA:   3'- acAGGUGGaaca-UCCAUa--CGCCGUCG- -5'
29029 3' -53.1 NC_006146.1 + 146212 0.67 0.95015
Target:  5'- -cUCCuCCg---GGGUAaGCGGCGGCc -3'
miRNA:   3'- acAGGuGGaacaUCCAUaCGCCGUCG- -5'
29029 3' -53.1 NC_006146.1 + 86233 0.67 0.953868
Target:  5'- gUGUCCaccGCCUUGggcuuGGUugacagcaggcacGUG-GGCAGCa -3'
miRNA:   3'- -ACAGG---UGGAACau---CCA-------------UACgCCGUCG- -5'
29029 3' -53.1 NC_006146.1 + 81796 0.67 0.95427
Target:  5'- gGUgCCACCUg--GGGcaGUGCcGGUAGCa -3'
miRNA:   3'- aCA-GGUGGAacaUCCa-UACG-CCGUCG- -5'
29029 3' -53.1 NC_006146.1 + 50216 0.67 0.961804
Target:  5'- cGUCCGCCc-GUGcacccgcgagauGGUG-GCGGUGGCu -3'
miRNA:   3'- aCAGGUGGaaCAU------------CCAUaCGCCGUCG- -5'
29029 3' -53.1 NC_006146.1 + 163742 0.67 0.965227
Target:  5'- ----gACCUUGUGGGguccugGCGGguGUa -3'
miRNA:   3'- acaggUGGAACAUCCaua---CGCCguCG- -5'
29029 3' -53.1 NC_006146.1 + 99202 0.67 0.965227
Target:  5'- cGUCCGCCUccagGgAGGcc-GCGGCcucGGCg -3'
miRNA:   3'- aCAGGUGGAa---CaUCCauaCGCCG---UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.