miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29029 5' -59.1 NC_006146.1 + 33243 0.66 0.818483
Target:  5'- -cGCCGGCG-GGUcCGCcggGCCGCUGcCc -3'
miRNA:   3'- gcCGGCCGCaCUAuGUG---CGGCGACaG- -5'
29029 5' -59.1 NC_006146.1 + 12731 0.66 0.817646
Target:  5'- aCGGCCaaggaGGCcaagGUGGUGCACGCUGagcccacCUGUg -3'
miRNA:   3'- -GCCGG-----CCG----CACUAUGUGCGGC-------GACAg -5'
29029 5' -59.1 NC_006146.1 + 33119 0.66 0.810041
Target:  5'- -cGCCGGCG-GGUucgcCGgGCCGCUGcCc -3'
miRNA:   3'- gcCGGCCGCaCUAu---GUgCGGCGACaG- -5'
29029 5' -59.1 NC_006146.1 + 170521 0.66 0.810041
Target:  5'- gCGGCgGGCGgggccUGAggggGCGCGgCGaUUGUCg -3'
miRNA:   3'- -GCCGgCCGC-----ACUa---UGUGCgGC-GACAG- -5'
29029 5' -59.1 NC_006146.1 + 46793 0.66 0.810041
Target:  5'- cCGGCCGGCGcGAggGCAaagGCCuCUGg- -3'
miRNA:   3'- -GCCGGCCGCaCUa-UGUg--CGGcGACag -5'
29029 5' -59.1 NC_006146.1 + 117692 0.66 0.801448
Target:  5'- aGGCCcGCG-GAguuugGCACGCCGCc--- -3'
miRNA:   3'- gCCGGcCGCaCUa----UGUGCGGCGacag -5'
29029 5' -59.1 NC_006146.1 + 114393 0.66 0.798841
Target:  5'- uGGCCGGCGacGAccccgcggcccgacUGCGCgcgcugauGCCGCUGg- -3'
miRNA:   3'- gCCGGCCGCa-CU--------------AUGUG--------CGGCGACag -5'
29029 5' -59.1 NC_006146.1 + 40007 0.66 0.79271
Target:  5'- uGGCCGGUGUGGgcguaGCAggggGCCuGCUGg- -3'
miRNA:   3'- gCCGGCCGCACUa----UGUg---CGG-CGACag -5'
29029 5' -59.1 NC_006146.1 + 159335 0.67 0.756475
Target:  5'- uGGCCGGCGUcucguGCGCCGCc--- -3'
miRNA:   3'- gCCGGCCGCAcuaugUGCGGCGacag -5'
29029 5' -59.1 NC_006146.1 + 153996 0.67 0.747137
Target:  5'- cCGGCCGGCcUGAUGgAC-CCGgUGg- -3'
miRNA:   3'- -GCCGGCCGcACUAUgUGcGGCgACag -5'
29029 5' -59.1 NC_006146.1 + 148518 0.67 0.747137
Target:  5'- gGGCCaGgGUGGagaGCAUGCUGCUGg- -3'
miRNA:   3'- gCCGGcCgCACUa--UGUGCGGCGACag -5'
29029 5' -59.1 NC_006146.1 + 56586 0.67 0.747137
Target:  5'- gCGGCCgGGCGccGA-GCcCGCCGCcgGUCu -3'
miRNA:   3'- -GCCGG-CCGCa-CUaUGuGCGGCGa-CAG- -5'
29029 5' -59.1 NC_006146.1 + 157074 0.67 0.747137
Target:  5'- cCGGCCGGCcUGAUGgAC-CCGgUGg- -3'
miRNA:   3'- -GCCGGCCGcACUAUgUGcGGCgACag -5'
29029 5' -59.1 NC_006146.1 + 141685 0.67 0.747137
Target:  5'- cCGGCCGGCcUGAUGgAC-CCGgUGg- -3'
miRNA:   3'- -GCCGGCCGcACUAUgUGcGGCgACag -5'
29029 5' -59.1 NC_006146.1 + 144762 0.67 0.747137
Target:  5'- cCGGCCGGCcUGAUGgAC-CCGgUGg- -3'
miRNA:   3'- -GCCGGCCGcACUAUgUGcGGCgACag -5'
29029 5' -59.1 NC_006146.1 + 147840 0.67 0.747137
Target:  5'- cCGGCCGGCcUGAUGgAC-CCGgUGg- -3'
miRNA:   3'- -GCCGGCCGcACUAUgUGcGGCgACag -5'
29029 5' -59.1 NC_006146.1 + 150918 0.67 0.747137
Target:  5'- cCGGCCGGCcUGAUGgAC-CCGgUGg- -3'
miRNA:   3'- -GCCGGCCGcACUAUgUGcGGCgACag -5'
29029 5' -59.1 NC_006146.1 + 36175 0.67 0.737704
Target:  5'- uGGCUGGCcUGGUGCAUGCaugccugcaggaCGUUGUg -3'
miRNA:   3'- gCCGGCCGcACUAUGUGCG------------GCGACAg -5'
29029 5' -59.1 NC_006146.1 + 114366 0.67 0.737704
Target:  5'- uGGCCcGCGUGAcGCGucaGCUGCUGa- -3'
miRNA:   3'- gCCGGcCGCACUaUGUg--CGGCGACag -5'
29029 5' -59.1 NC_006146.1 + 151528 0.68 0.728184
Target:  5'- uGGCCa-CGUGAgACACGCUGUUGg- -3'
miRNA:   3'- gCCGGccGCACUaUGUGCGGCGACag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.