Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29029 | 5' | -59.1 | NC_006146.1 | + | 66512 | 1.1 | 0.001524 |
Target: 5'- cCGGCCGGCGUGAUACACGCCGCUGUCa -3' miRNA: 3'- -GCCGGCCGCACUAUGUGCGGCGACAG- -5' |
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29029 | 5' | -59.1 | NC_006146.1 | + | 65497 | 0.77 | 0.249625 |
Target: 5'- uGGCCGGCGUGggGCugGuuGgUGUg -3' miRNA: 3'- gCCGGCCGCACuaUGugCggCgACAg -5' |
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29029 | 5' | -59.1 | NC_006146.1 | + | 44727 | 0.72 | 0.465635 |
Target: 5'- uGGCCGGCcUGAUGCGgugGCCGCgggcggcugugguUGUCg -3' miRNA: 3'- gCCGGCCGcACUAUGUg--CGGCG-------------ACAG- -5' |
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29029 | 5' | -59.1 | NC_006146.1 | + | 170088 | 0.72 | 0.484818 |
Target: 5'- uGGCCGGCGgGAgggGCcgGCGCCGCa--- -3' miRNA: 3'- gCCGGCCGCaCUa--UG--UGCGGCGacag -5' |
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29029 | 5' | -59.1 | NC_006146.1 | + | 72566 | 0.71 | 0.52235 |
Target: 5'- gGcGCCGGCGUGGUGCuggggcuUGCCGggGUUa -3' miRNA: 3'- gC-CGGCCGCACUAUGu------GCGGCgaCAG- -5' |
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29029 | 5' | -59.1 | NC_006146.1 | + | 89447 | 0.7 | 0.570732 |
Target: 5'- uGGCCcccGGCGUGAaGCugGUgGUUGUUu -3' miRNA: 3'- gCCGG---CCGCACUaUGugCGgCGACAG- -5' |
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29029 | 5' | -59.1 | NC_006146.1 | + | 115364 | 0.7 | 0.614168 |
Target: 5'- uGGCCGGCGUGGcGgcggagcuggaggccCugGCCGCUc-- -3' miRNA: 3'- gCCGGCCGCACUaU---------------GugCGGCGAcag -5' |
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29029 | 5' | -59.1 | NC_006146.1 | + | 33967 | 0.69 | 0.630054 |
Target: 5'- gGGUgGGCGUGGUccGCugGguCCGCUGg- -3' miRNA: 3'- gCCGgCCGCACUA--UGugC--GGCGACag -5' |
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29029 | 5' | -59.1 | NC_006146.1 | + | 2483 | 0.69 | 0.630054 |
Target: 5'- uGGCCGGCG-GggGCAgGCaGCUGg- -3' miRNA: 3'- gCCGGCCGCaCuaUGUgCGgCGACag -5' |
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29029 | 5' | -59.1 | NC_006146.1 | + | 51197 | 0.69 | 0.659825 |
Target: 5'- gGGCUGGCGUGGUACagggcauccacgAgGCCGggGUg -3' miRNA: 3'- gCCGGCCGCACUAUG------------UgCGGCgaCAg -5' |
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29029 | 5' | -59.1 | NC_006146.1 | + | 128121 | 0.68 | 0.678596 |
Target: 5'- uGGCCgaGGCGgcc-ACGCGCCGCcugcaccUGUCg -3' miRNA: 3'- gCCGG--CCGCacuaUGUGCGGCG-------ACAG- -5' |
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29029 | 5' | -59.1 | NC_006146.1 | + | 305 | 0.68 | 0.689408 |
Target: 5'- gGGcCCGGCGcGcucgcCACGCCcaGCUGUCa -3' miRNA: 3'- gCC-GGCCGCaCuau--GUGCGG--CGACAG- -5' |
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29029 | 5' | -59.1 | NC_006146.1 | + | 33748 | 0.68 | 0.718586 |
Target: 5'- cCGGUgGGUGUGGUccGCugGguCCGCUGg- -3' miRNA: 3'- -GCCGgCCGCACUA--UGugC--GGCGACag -5' |
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29029 | 5' | -59.1 | NC_006146.1 | + | 151528 | 0.68 | 0.728184 |
Target: 5'- uGGCCa-CGUGAgACACGCUGUUGg- -3' miRNA: 3'- gCCGGccGCACUaUGUGCGGCGACag -5' |
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29029 | 5' | -59.1 | NC_006146.1 | + | 114366 | 0.67 | 0.737704 |
Target: 5'- uGGCCcGCGUGAcGCGucaGCUGCUGa- -3' miRNA: 3'- gCCGGcCGCACUaUGUg--CGGCGACag -5' |
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29029 | 5' | -59.1 | NC_006146.1 | + | 36175 | 0.67 | 0.737704 |
Target: 5'- uGGCUGGCcUGGUGCAUGCaugccugcaggaCGUUGUg -3' miRNA: 3'- gCCGGCCGcACUAUGUGCG------------GCGACAg -5' |
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29029 | 5' | -59.1 | NC_006146.1 | + | 157074 | 0.67 | 0.747137 |
Target: 5'- cCGGCCGGCcUGAUGgAC-CCGgUGg- -3' miRNA: 3'- -GCCGGCCGcACUAUgUGcGGCgACag -5' |
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29029 | 5' | -59.1 | NC_006146.1 | + | 153996 | 0.67 | 0.747137 |
Target: 5'- cCGGCCGGCcUGAUGgAC-CCGgUGg- -3' miRNA: 3'- -GCCGGCCGcACUAUgUGcGGCgACag -5' |
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29029 | 5' | -59.1 | NC_006146.1 | + | 150918 | 0.67 | 0.747137 |
Target: 5'- cCGGCCGGCcUGAUGgAC-CCGgUGg- -3' miRNA: 3'- -GCCGGCCGcACUAUgUGcGGCgACag -5' |
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29029 | 5' | -59.1 | NC_006146.1 | + | 141685 | 0.67 | 0.747137 |
Target: 5'- cCGGCCGGCcUGAUGgAC-CCGgUGg- -3' miRNA: 3'- -GCCGGCCGcACUAUgUGcGGCgACag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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