miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29029 5' -59.1 NC_006146.1 + 33967 0.69 0.630054
Target:  5'- gGGUgGGCGUGGUccGCugGguCCGCUGg- -3'
miRNA:   3'- gCCGgCCGCACUA--UGugC--GGCGACag -5'
29029 5' -59.1 NC_006146.1 + 72566 0.71 0.52235
Target:  5'- gGcGCCGGCGUGGUGCuggggcuUGCCGggGUUa -3'
miRNA:   3'- gC-CGGCCGCACUAUGu------GCGGCgaCAG- -5'
29029 5' -59.1 NC_006146.1 + 170088 0.72 0.484818
Target:  5'- uGGCCGGCGgGAgggGCcgGCGCCGCa--- -3'
miRNA:   3'- gCCGGCCGCaCUa--UG--UGCGGCGacag -5'
29029 5' -59.1 NC_006146.1 + 44727 0.72 0.465635
Target:  5'- uGGCCGGCcUGAUGCGgugGCCGCgggcggcugugguUGUCg -3'
miRNA:   3'- gCCGGCCGcACUAUGUg--CGGCG-------------ACAG- -5'
29029 5' -59.1 NC_006146.1 + 65497 0.77 0.249625
Target:  5'- uGGCCGGCGUGggGCugGuuGgUGUg -3'
miRNA:   3'- gCCGGCCGCACuaUGugCggCgACAg -5'
29029 5' -59.1 NC_006146.1 + 66512 1.1 0.001524
Target:  5'- cCGGCCGGCGUGAUACACGCCGCUGUCa -3'
miRNA:   3'- -GCCGGCCGCACUAUGUGCGGCGACAG- -5'
29029 5' -59.1 NC_006146.1 + 33243 0.66 0.818483
Target:  5'- -cGCCGGCG-GGUcCGCcggGCCGCUGcCc -3'
miRNA:   3'- gcCGGCCGCaCUAuGUG---CGGCGACaG- -5'
29029 5' -59.1 NC_006146.1 + 33119 0.66 0.810041
Target:  5'- -cGCCGGCG-GGUucgcCGgGCCGCUGcCc -3'
miRNA:   3'- gcCGGCCGCaCUAu---GUgCGGCGACaG- -5'
29029 5' -59.1 NC_006146.1 + 159335 0.67 0.756475
Target:  5'- uGGCCGGCGUcucguGCGCCGCc--- -3'
miRNA:   3'- gCCGGCCGCAcuaugUGCGGCGacag -5'
29029 5' -59.1 NC_006146.1 + 56586 0.67 0.747137
Target:  5'- gCGGCCgGGCGccGA-GCcCGCCGCcgGUCu -3'
miRNA:   3'- -GCCGG-CCGCa-CUaUGuGCGGCGa-CAG- -5'
29029 5' -59.1 NC_006146.1 + 36175 0.67 0.737704
Target:  5'- uGGCUGGCcUGGUGCAUGCaugccugcaggaCGUUGUg -3'
miRNA:   3'- gCCGGCCGcACUAUGUGCG------------GCGACAg -5'
29029 5' -59.1 NC_006146.1 + 128121 0.68 0.678596
Target:  5'- uGGCCgaGGCGgcc-ACGCGCCGCcugcaccUGUCg -3'
miRNA:   3'- gCCGG--CCGCacuaUGUGCGGCG-------ACAG- -5'
29029 5' -59.1 NC_006146.1 + 46793 0.66 0.810041
Target:  5'- cCGGCCGGCGcGAggGCAaagGCCuCUGg- -3'
miRNA:   3'- -GCCGGCCGCaCUa-UGUg--CGGcGACag -5'
29029 5' -59.1 NC_006146.1 + 33748 0.68 0.718586
Target:  5'- cCGGUgGGUGUGGUccGCugGguCCGCUGg- -3'
miRNA:   3'- -GCCGgCCGCACUA--UGugC--GGCGACag -5'
29029 5' -59.1 NC_006146.1 + 148518 0.67 0.747137
Target:  5'- gGGCCaGgGUGGagaGCAUGCUGCUGg- -3'
miRNA:   3'- gCCGGcCgCACUa--UGUGCGGCGACag -5'
29029 5' -59.1 NC_006146.1 + 170521 0.66 0.810041
Target:  5'- gCGGCgGGCGgggccUGAggggGCGCGgCGaUUGUCg -3'
miRNA:   3'- -GCCGgCCGC-----ACUa---UGUGCgGC-GACAG- -5'
29029 5' -59.1 NC_006146.1 + 151528 0.68 0.728184
Target:  5'- uGGCCa-CGUGAgACACGCUGUUGg- -3'
miRNA:   3'- gCCGGccGCACUaUGUGCGGCGACag -5'
29029 5' -59.1 NC_006146.1 + 2483 0.69 0.630054
Target:  5'- uGGCCGGCG-GggGCAgGCaGCUGg- -3'
miRNA:   3'- gCCGGCCGCaCuaUGUgCGgCGACag -5'
29029 5' -59.1 NC_006146.1 + 89447 0.7 0.570732
Target:  5'- uGGCCcccGGCGUGAaGCugGUgGUUGUUu -3'
miRNA:   3'- gCCGG---CCGCACUaUGugCGgCGACAG- -5'
29029 5' -59.1 NC_006146.1 + 115364 0.7 0.614168
Target:  5'- uGGCCGGCGUGGcGgcggagcuggaggccCugGCCGCUc-- -3'
miRNA:   3'- gCCGGCCGCACUaU---------------GugCGGCGAcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.