Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2903 | 3' | -56.5 | NC_001493.1 | + | 94966 | 0.72 | 0.525737 |
Target: 5'- ---aCGGAGCUCCGCccggggaucuACGAGCGGCGg -3' miRNA: 3'- cuucGCUUCGAGGCGc---------UGCUCGUCGU- -5' |
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2903 | 3' | -56.5 | NC_001493.1 | + | 45845 | 0.66 | 0.857514 |
Target: 5'- --cGCGAAGUUCUGUGcGCGA-CAGCc -3' miRNA: 3'- cuuCGCUUCGAGGCGC-UGCUcGUCGu -5' |
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2903 | 3' | -56.5 | NC_001493.1 | + | 121426 | 0.68 | 0.760269 |
Target: 5'- uAGGUGAcccAGCUCCGCaucgaGAGUGGCAg -3' miRNA: 3'- cUUCGCU---UCGAGGCGcug--CUCGUCGU- -5' |
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2903 | 3' | -56.5 | NC_001493.1 | + | 5872 | 0.68 | 0.760269 |
Target: 5'- uAGGUGAcccAGCUCCGCaucgaGAGUGGCAg -3' miRNA: 3'- cUUCGCU---UCGAGGCGcug--CUCGUCGU- -5' |
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2903 | 3' | -56.5 | NC_001493.1 | + | 121228 | 0.68 | 0.720762 |
Target: 5'- uAGGUGAccAGCUCCGCaucgaGAGUGGCAg -3' miRNA: 3'- cUUCGCU--UCGAGGCGcug--CUCGUCGU- -5' |
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2903 | 3' | -56.5 | NC_001493.1 | + | 5674 | 0.68 | 0.720762 |
Target: 5'- uAGGUGAccAGCUCCGCaucgaGAGUGGCAg -3' miRNA: 3'- cUUCGCU--UCGAGGCGcug--CUCGUCGU- -5' |
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2903 | 3' | -56.5 | NC_001493.1 | + | 54192 | 0.69 | 0.669686 |
Target: 5'- uGAAGCGAGGggCCGCGAaccugGAGCA-CAu -3' miRNA: 3'- -CUUCGCUUCgaGGCGCUg----CUCGUcGU- -5' |
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2903 | 3' | -56.5 | NC_001493.1 | + | 12169 | 0.69 | 0.669686 |
Target: 5'- gGAGGCGGgaauagauGGUggaCCGgGACGAGguGCGg -3' miRNA: 3'- -CUUCGCU--------UCGa--GGCgCUGCUCguCGU- -5' |
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2903 | 3' | -56.5 | NC_001493.1 | + | 66134 | 0.7 | 0.632356 |
Target: 5'- cGAAGCGggGUgacucgaugggaacaUCCGCGACGGucuGUcGCAc -3' miRNA: 3'- -CUUCGCuuCG---------------AGGCGCUGCU---CGuCGU- -5' |
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2903 | 3' | -56.5 | NC_001493.1 | + | 98379 | 0.7 | 0.6282 |
Target: 5'- cAAG-GGAGUUUCGUGAgGAGCAGUAa -3' miRNA: 3'- cUUCgCUUCGAGGCGCUgCUCGUCGU- -5' |
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2903 | 3' | -56.5 | NC_001493.1 | + | 127724 | 0.7 | 0.597087 |
Target: 5'- gGAGGCGGgaauagauGGUggCCGgGACGAGguGCGg -3' miRNA: 3'- -CUUCGCU--------UCGa-GGCgCUGCUCguCGU- -5' |
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2903 | 3' | -56.5 | NC_001493.1 | + | 59636 | 0.7 | 0.617815 |
Target: 5'- cGggGCGAcaaucGaaaUCCGUGACGAGC-GCAu -3' miRNA: 3'- -CuuCGCUu----Cg--AGGCGCUGCUCGuCGU- -5' |
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2903 | 3' | -56.5 | NC_001493.1 | + | 28422 | 0.71 | 0.586759 |
Target: 5'- cGAGGCGgcGCUCCGCGA---GCAGa- -3' miRNA: 3'- -CUUCGCuuCGAGGCGCUgcuCGUCgu -5' |
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2903 | 3' | -56.5 | NC_001493.1 | + | 62676 | 0.71 | 0.576465 |
Target: 5'- -cGGCGAAGC-CCGCGG-GAGCcaacGGCAc -3' miRNA: 3'- cuUCGCUUCGaGGCGCUgCUCG----UCGU- -5' |
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2903 | 3' | -56.5 | NC_001493.1 | + | 62718 | 0.71 | 0.576465 |
Target: 5'- -cGGCGAAGC-CCGCGG-GAGCcaacGGCAc -3' miRNA: 3'- cuUCGCUUCGaGGCGCUgCUCG----UCGU- -5' |
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2903 | 3' | -56.5 | NC_001493.1 | + | 62760 | 0.71 | 0.576465 |
Target: 5'- -cGGCGAAGC-CCGCGG-GAGCcaacGGCAc -3' miRNA: 3'- cuUCGCUUCGaGGCGCUgCUCG----UCGU- -5' |
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2903 | 3' | -56.5 | NC_001493.1 | + | 62802 | 0.71 | 0.576465 |
Target: 5'- -cGGCGAAGC-CCGCGG-GAGCcaacGGCAc -3' miRNA: 3'- cuUCGCUUCGaGGCGCUgCUCG----UCGU- -5' |
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2903 | 3' | -56.5 | NC_001493.1 | + | 63303 | 0.71 | 0.545854 |
Target: 5'- -cGGCGAAGC-CCGCGggaGCGAaCGGCAc -3' miRNA: 3'- cuUCGCUUCGaGGCGC---UGCUcGUCGU- -5' |
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2903 | 3' | -56.5 | NC_001493.1 | + | 95114 | 0.71 | 0.54181 |
Target: 5'- cGGGCGGAGCUCCGUGucauuuaacagccCGAGgGGCu -3' miRNA: 3'- cUUCGCUUCGAGGCGCu------------GCUCgUCGu -5' |
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2903 | 3' | -56.5 | NC_001493.1 | + | 35447 | 0.66 | 0.865247 |
Target: 5'- cGAGCGGu-CUCCGCug-GGGCAGCAc -3' miRNA: 3'- cUUCGCUucGAGGCGcugCUCGUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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