miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2903 5' -56 NC_001493.1 + 128891 0.67 0.85142
Target:  5'- uGCGGugcucGGCGGGacguguUCGCGcccGACCUGUACg -3'
miRNA:   3'- cCGCC-----UCGUCU------AGCGC---UUGGACGUGg -5'
2903 5' -56 NC_001493.1 + 13337 0.67 0.85142
Target:  5'- uGCGGugcucGGCGGGacguguUCGCGcccGACCUGUACg -3'
miRNA:   3'- cCGCC-----UCGUCU------AGCGC---UUGGACGUGg -5'
2903 5' -56 NC_001493.1 + 95604 0.67 0.85142
Target:  5'- gGGCGaGAGaCGGGUgGUGGACCUcC-CCg -3'
miRNA:   3'- -CCGC-CUC-GUCUAgCGCUUGGAcGuGG- -5'
2903 5' -56 NC_001493.1 + 108892 0.67 0.843429
Target:  5'- cGGUGGAGUuucGGUCGCgcugGggUgUGCgACCa -3'
miRNA:   3'- -CCGCCUCGu--CUAGCG----CuuGgACG-UGG- -5'
2903 5' -56 NC_001493.1 + 14824 0.67 0.843429
Target:  5'- cGUGGAGCcccgcguGGUCGUGcuggaaGACCUGCucacgGCCg -3'
miRNA:   3'- cCGCCUCGu------CUAGCGC------UUGGACG-----UGG- -5'
2903 5' -56 NC_001493.1 + 130378 0.67 0.843429
Target:  5'- cGUGGAGCcccgcguGGUCGUGcuggaaGACCUGCucacgGCCg -3'
miRNA:   3'- cCGCCUCGu------CUAGCGC------UUGGACG-----UGG- -5'
2903 5' -56 NC_001493.1 + 28045 0.67 0.835245
Target:  5'- uGCGG-GUGGAUCGacCGGACCggGCgGCCg -3'
miRNA:   3'- cCGCCuCGUCUAGC--GCUUGGa-CG-UGG- -5'
2903 5' -56 NC_001493.1 + 53749 0.67 0.835245
Target:  5'- cGGCGGuGCccaugauauGGAUCGUuucGAuaGCUUGCACg -3'
miRNA:   3'- -CCGCCuCG---------UCUAGCG---CU--UGGACGUGg -5'
2903 5' -56 NC_001493.1 + 93825 0.67 0.835245
Target:  5'- cGGgGGuaaaucGGCGGG-CGCGA-CCUGCaggGCCg -3'
miRNA:   3'- -CCgCC------UCGUCUaGCGCUuGGACG---UGG- -5'
2903 5' -56 NC_001493.1 + 27778 0.68 0.826876
Target:  5'- -uCGGGGCcGAUCcCGAGCCcGCGCg -3'
miRNA:   3'- ccGCCUCGuCUAGcGCUUGGaCGUGg -5'
2903 5' -56 NC_001493.1 + 110896 0.68 0.826876
Target:  5'- aGGUGGGuGCucGAaUGCGugccgcACCUGCACCc -3'
miRNA:   3'- -CCGCCU-CGu-CUaGCGCu-----UGGACGUGG- -5'
2903 5' -56 NC_001493.1 + 13606 0.68 0.82603
Target:  5'- aGCGGuGCAacGAUCGCGcgGAUCgucggaagaugcgUGCACCu -3'
miRNA:   3'- cCGCCuCGU--CUAGCGC--UUGG-------------ACGUGG- -5'
2903 5' -56 NC_001493.1 + 129160 0.68 0.82603
Target:  5'- aGCGGuGCAacGAUCGCGcgGAUCgucggaagaugcgUGCACCu -3'
miRNA:   3'- cCGCCuCGU--CUAGCGC--UUGG-------------ACGUGG- -5'
2903 5' -56 NC_001493.1 + 91686 0.68 0.81833
Target:  5'- gGGgGGAGCAGGUgGagGAACCggugGaggaACCg -3'
miRNA:   3'- -CCgCCUCGUCUAgCg-CUUGGa---Cg---UGG- -5'
2903 5' -56 NC_001493.1 + 93272 0.68 0.791706
Target:  5'- cGCGGgauAGCAcGAUC-CGAACgUGCAUCc -3'
miRNA:   3'- cCGCC---UCGU-CUAGcGCUUGgACGUGG- -5'
2903 5' -56 NC_001493.1 + 45048 0.69 0.773221
Target:  5'- cGGCGGucauGgGGA-CGCGAgauAUUUGCGCCc -3'
miRNA:   3'- -CCGCCu---CgUCUaGCGCU---UGGACGUGG- -5'
2903 5' -56 NC_001493.1 + 87047 0.69 0.76093
Target:  5'- cGgGGAGCAGGaugaacUCGCGGcucuggucgaaaguACCggugcggGCACCg -3'
miRNA:   3'- cCgCCUCGUCU------AGCGCU--------------UGGa------CGUGG- -5'
2903 5' -56 NC_001493.1 + 37033 0.69 0.74457
Target:  5'- cGGCGGGGCGGAcCGCcagcGACCacaacgGC-CCg -3'
miRNA:   3'- -CCGCCUCGUCUaGCGc---UUGGa-----CGuGG- -5'
2903 5' -56 NC_001493.1 + 102458 0.69 0.734809
Target:  5'- cGGCGGgucGGgGGGUCGCGAcgGCC-GguCCu -3'
miRNA:   3'- -CCGCC---UCgUCUAGCGCU--UGGaCguGG- -5'
2903 5' -56 NC_001493.1 + 58872 0.7 0.724959
Target:  5'- gGGcCGuGAGCcGGUCGCGAuggcacaucCCUGCGuCCa -3'
miRNA:   3'- -CC-GC-CUCGuCUAGCGCUu--------GGACGU-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.